PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR81540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 167aa MW: 19308.8 Da PI: 8.4957 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.8e-20 | 21 | 79 | 4 | 57 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+eq+++L +lF++ r+p++++++ ++++l +++ ++V++WFqN++a+e++ RWR81540.1 21 RWNPTAEQVKVLTDLFRSgLRTPTTDQIQNISSHLsfygQIESKNVFYWFQNHKARERQ 79 *****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.8 | 1.8e-36 | 20 | 81 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yG+ie+kNVfyWFQN+kaRerqk+ RWR81540.1 20 GRWNPTAEQVKVLTDLFRSGLRTPTTDQIQNISSHLSFYGQIESKNVFYWFQNHKARERQKR 81 6***********************************************************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence |
MDERMPGVGL KGVGGKCGGG RWNPTAEQVK VLTDLFRSGL RTPTTDQIQN ISSHLSFYGQ 60 IESKNVFYWF QNHKARERQK RRRISHSVHH VDRDHHLALV KHGGEADLQV MEQERAIETL 120 QLFPLNTYEE ESQVDKFRYR RGEWKEITFL PATGEDPPPL DLRLSSL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 14 | 20 | GGKCGGG |
2 | 80 | 84 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11260.1 | 9e-48 | WOX family protein |