PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR81468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21527.5 Da PI: 8.3713 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 147.9 | 2.7e-46 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+ RWR81468.1 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISFLQHQLRQLQMDLSCAKS 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e RWR81468.1 107 E 107 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELQPHQ 60 REDAVNSLAY EADMRLRDPV YGCVGVISFL QHQLRQLQMD LSCAKSELSK YQNVGIAGHG 120 IIAAGNAPIG IGLGREQFFP RDPQMMVRNY DADMARLGAS GAYDASLLAM NVSASIGPLG 180 QFQHPRAGGD ERRSVGPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 2e-73 | LBD family protein |