PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81392.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-PHD

Protein Properties

Length: 902aa MW: 100141 Da PI: 4.6511

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.8	1.3e-11	607	652	8	53
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e ++L e F+ n yp++e+ e L+k++g+t qV++WF N R RWR81392.1 607 GREVSQRLCESFKANAYPTQEMLENLSKEIGITFHQVSIWFENTRR 652 56777999***********************************995 PP
2	PHD	35	3.2e-12	234	287	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 +C+ Cg+ +++++vlCd gC++ fH+ Cl ++l + + +++wlC+ C++k RWR81392.1 234 FCAKCGSkdFSANNDIVLCDgGCDRGFHQMCLVPPLLNIPPGDDSWLCPGCDCK 287 6999966566****56***********8888888*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MDVSHPVEEH CQEQNSLDTK DKHTGAEETM QVGSDFIDTD RPKPSTEDSV DFEANLRSDG 60 TPQAATNNSG TPSQIEKRVN SKLGGKRYPL RSSLEGTRVL RSRSNGVCNA PPTNTSTNSI 120 SSTTQRRKNR KKRKGQNKVS NDELADIRRR VKYLSARMNY EQSLIDAYSG EGWKRQSAEK 180 VRPEKELQRA SSEILRRKLE LRDLFQRLDT ICAEGKLQDS LFDSEGQIDS EDIFCAKCGS 240 KDFSANNDIV LCDGGCDRGF HQMCLVPPLL NIPPGDDSWL CPGCDCKSDC IGVLNDIQGT 300 NLSIEDKWEK VFPEAAAAAS GDKQQDELGL PSDDSEDDDY DPDCPEADEK IQKESSSSEE 360 SGSTSTSDGS SASADDKQHI NPGFSSDDSE DNDFDPDAPE LDEKVQSEGL SSDESDFSSD 420 TNDLIPSKYD NDSSGSDNET SPNHAEHIGG FDGGEPEVSQ RTKRTLSSEL LSTLERDQSG 480 EIFLPVSGKR LRERLDYKKL NDETYGNIHS DSSDDDDWTD MNTLKKVKRR VESKSTVMAS 540 LQNTQTIQDG ENTKQSQRKP EGEVLREQEK LPDTRTLHNL ESEGANHTMK PYYMRRKLTT 600 SRPGCFGREV SQRLCESFKA NAYPTQEMLE NLSKEIGITF HQVSIWFENT RRSFCLPETK 660 EESKEENGTP NEDSISTKAN IEEPRSGVKV VSANNKSSKT ENNTPSQDSN HTEMDVKEPG 720 SETKVVSTNK EASKTEINTP NKDNIPPKTT VNEPQPEEKV VSATKEASET ENSTPNKDSI 780 SATTNGKEPV PEVVAVADSL ASIEVEEIQP FNLSTDHATP NRKGSRKVAS TTPRWNSARY 840 ESRKRRQAML EGRAAGEALT DNAKPTRRKE TDLPGVQPDQ TNGQCNKFES VHSHVETRRY 900 SG

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MDVSHPVEEH CQEQNSLDTK DKHTGAEETM QVGSDFIDTD RPKPSTEDSV DFEANLRSDG  60
TPQAATNNSG TPSQIEKRVN SKLGGKRYPL RSSLEGTRVL RSRSNGVCNA PPTNTSTNSI  120
SSTTQRRKNR KKRKGQNKVS NDELADIRRR VKYLSARMNY EQSLIDAYSG EGWKRQSAEK  180
VRPEKELQRA SSEILRRKLE LRDLFQRLDT ICAEGKLQDS LFDSEGQIDS EDIFCAKCGS  240
KDFSANNDIV LCDGGCDRGF HQMCLVPPLL NIPPGDDSWL CPGCDCKSDC IGVLNDIQGT  300
NLSIEDKWEK VFPEAAAAAS GDKQQDELGL PSDDSEDDDY DPDCPEADEK IQKESSSSEE  360
SGSTSTSDGS SASADDKQHI NPGFSSDDSE DNDFDPDAPE LDEKVQSEGL SSDESDFSSD  420
TNDLIPSKYD NDSSGSDNET SPNHAEHIGG FDGGEPEVSQ RTKRTLSSEL LSTLERDQSG  480
EIFLPVSGKR LRERLDYKKL NDETYGNIHS DSSDDDDWTD MNTLKKVKRR VESKSTVMAS  540
LQNTQTIQDG ENTKQSQRKP EGEVLREQEK LPDTRTLHNL ESEGANHTMK PYYMRRKLTT  600
SRPGCFGREV SQRLCESFKA NAYPTQEMLE NLSKEIGITF HQVSIWFENT RRSFCLPETK  660
EESKEENGTP NEDSISTKAN IEEPRSGVKV VSANNKSSKT ENNTPSQDSN HTEMDVKEPG  720
SETKVVSTNK EASKTEINTP NKDNIPPKTT VNEPQPEEKV VSATKEASET ENSTPNKDSI  780
SATTNGKEPV PEVVAVADSL ASIEVEEIQP FNLSTDHATP NRKGSRKVAS TTPRWNSARY  840
ESRKRRQAML EGRAAGEALT DNAKPTRRKE TDLPGVQPDQ TNGQCNKFES VHSHVETRRY  900
SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	134	QRRKNRKKRK
2	524	530	LKKVKRR
3	842	847	SRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-83	HB-PHD family protein