PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80983.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 365aa MW: 42399.4 Da PI: 5.392

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.5	3.3e-36	41	133	1	102
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 aFl+k++++++d+++++++sws ++nsf+v+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i RWR80983.1 41 AFLSKTFDMVDDRSTDHVVSWSWSSNSFIVWDPHDFSTNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKEI 128 69******************999*************************************999.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 kr+k RWR80983.1 129 KRRKP 133 985 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MNPLNPVKEE HPGSSSSYSG DPPMIDLPQP MEGLHEPGPP AFLSKTFDMV DDRSTDHVVS 60 WSWSSNSFIV WDPHDFSTNL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG 120 QKHLLKEIKR RKPPSPSPLQ RQSLGPCVEI GRFGLDQEID RLRRDRNILM TELVSLRQQQ 180 QDTRAQLQSM EERLQEPEQK QQHMMTFLAK AIQHPNFIGQ LVQLKEHRKQ LEDAITKKRR 240 RPIDICTRHE EGTVVESSTS RNQEAHIKRE AGSFEEVHGV EISELEALAL EIQGFRRIKK 300 GEDEERRQRG KEIDDEDKEL SAEFWEELLN ENIGEEKVAT DAEGREDEEV NRLTERIGDL 360 GSSPK

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MNPLNPVKEE HPGSSSSYSG DPPMIDLPQP MEGLHEPGPP AFLSKTFDMV DDRSTDHVVS  60
WSWSSNSFIV WDPHDFSTNL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKEIKR RKPPSPSPLQ RQSLGPCVEI GRFGLDQEID RLRRDRNILM TELVSLRQQQ  180
QDTRAQLQSM EERLQEPEQK QQHMMTFLAK AIQHPNFIGQ LVQLKEHRKQ LEDAITKKRR  240
RPIDICTRHE EGTVVESSTS RNQEAHIKRE AGSFEEVHGV EISELEALAL EIQGFRRIKK  300
GEDEERRQRG KEIDDEDKEL SAEFWEELLN ENIGEEKVAT DAEGREDEEV NRLTERIGDL  360
GSSPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	LKEIKRR
2	161	166	RLRRDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-103	HSF family protein