PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR80772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 801aa MW: 87505.7 Da PI: 5.6794 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.2 | 9.2e-21 | 107 | 162 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k RWR80772.1 107 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLSLESRQVKFWFQNRRTQMK 162 688999***********************************************999 PP | |||||||
2 | START | 198.8 | 2.4e-62 | 310 | 533 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela++ ++el+k+++ +ep+Wv s e +n++e++ +f++ + + +ea+r+ g+ + + lve+l+d + +W e+++ +a+t++vis RWR80772.1 310 ELALASMDELLKMVQTDEPLWVPSLdsgkETLNYEEYMCTFPRCIGpkpvgFVTEASRDRGIIIVSSGPLVETLMDAN-RWAEMFPcliaRASTTDVIS 407 57899********************99**************99998********************************.******************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 sg g++qlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ p+ ss+ +++lpSg+++++++ng+skvtwveh+++++ +h RWR80772.1 408 SGmggtrnGTIQLMRAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDGIRETPTASSYTNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDETAVH 506 *********************************************************99**************************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 179 wllrslvksglaegaktwvatlqrqce 205 +l+r+l++sg+ +ga++wvatl+rqc+ RWR80772.1 507 QLYRPLLSSGMGFGAQRWVATLKRQCQ 533 **************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence |
MSFGDFFDHS ASARVVADIP YNNMTAGAIS QPHMVSSTLT KTMFNTPGLS LALQTHMDGR 60 GEMGRVGNDF EASAGRNKED EYESRSGSDN MEGGSGDDQD ADNPPKKKRY HRHTPQQIQE 120 LESLFKECPH PDEKQRLELS RRLSLESRQV KFWFQNRRTQ MKTQLERHEN SLLRQENDKL 180 RAENLSIRDA MRNPICSNCG GPAMLGEVSL EEQHLRIENA RLKDELDRVC ALAGKFLGRP 240 VQSMAASVQP QMQFSSLDLA VGSNGFGGLS AVTTTLPLVT DFGGLSSTLP VVPGSAPANA 300 MGMERSIFLE LALASMDELL KMVQTDEPLW VPSLDSGKET LNYEEYMCTF PRCIGPKPVG 360 FVTEASRDRG IIIVSSGPLV ETLMDANRWA EMFPCLIARA STTDVISSGM GGTRNGTIQL 420 MRAELQVLSP LVPIREVNFL RFCKQHAEGV WAVVDVSIDG IRETPTASSY TNCRRLPSGC 480 VVQDMPNGYS KVTWVEHAEY DETAVHQLYR PLLSSGMGFG AQRWVATLKR QCQSLTMLMS 540 ATIPPARDPN PITASGRRSM LKLAARMTRN FFAGVCASTV HEWKKLSGVG KVVEEDDVTR 600 VMTRKSVDDP GEPPGIVLSA ATCVWLPVSP QRLFDFLRDE TLRREWDILS NGGPMQEMAH 660 LPKGPEPGIG NAVSLLRASS AMSGNQNSML ILQETSIDES GALVVYAPVD IPAMNVVMNG 720 GDSDYVALLP SGFAIVPDSP VGLGPLNNGA QKIGGSLLTV AFQILVNHLP TAKLTDESVD 780 TVNNLISCTV QKIKGALHCE S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |