PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80695.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 207aa    MW: 22623.4 Da    PI: 8.0807
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.5e-40221221100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC++dC++apyf +e+ +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+  l+ael+ ++
  RWR80695.1  22 PCGACKFLRRKCVRDCIFAPYFDSEHgASHFAAVHKVFGASNVSKLLLRIPAHKRLDAVVTICYEAQARIRDPVYGCVSHIFSLQQQVVDLQAELEFVQ 120
                 7*********************999879********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  RWR80695.1 121 TH 122
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MSRYTTTTSS SGNSIVSSGS GPCGACKFLR RKCVRDCIFA PYFDSEHGAS HFAAVHKVFG  60
ASNVSKLLLR IPAHKRLDAV VTICYEAQAR IRDPVYGCVS HIFSLQQQVV DLQAELEFVQ  120
THLASFELPT HQSRSLVSTT ASSYSASTSS LSANINSQQL QTLPEAANGR RSPPESSHSI  180
DDEFQSLAQE FLSIYFPGVR FPHSKSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.19e-59LBD family protein