PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80643.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family SBP
Protein Properties Length: 352aa    MW: 38663.7 Da    PI: 7.56
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.6e-41113190178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +CqvegC++ l++ak+yhrrhkvCe+hskap+v+v g eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  RWR80643.1 113 RCQVEGCHVTLTDAKDYHRRHKVCEAHSKAPKVVVLGAEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSAN 190
                 6**************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MEDGGYGKGF SSHQWPSDWN GFLPTSFVNS SSSSCEEGRN LRMLYGGGGE KHVAAGGDGG  60
GGGGENVHLT CLNLGKRHYF EDGGEALGGK RGRGTGYYQT TSSSSSSSSA VPRCQVEGCH  120
VTLTDAKDYH RRHKVCEAHS KAPKVVVLGA EQRFCQQCSR FHVVSEFDDS KRSCRRRLAG  180
HNERRRKSAN EFIARNPSQA ENSTMECRFP SISSMTGCAL SLLSSKTSWI SSADLSSRSS  240
AALRELIAEN RAKVLAKQLF SDGDLHYVHN STAGAQGYLT HSQHNQFDPD RSEACRLLPS  300
WNHFHEPSMH VTLDLMQTPE SSFGFMSGRS RPKEEEEECC AIWKSLEDAH VV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-36SBP family protein