PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR80618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 25716.9 Da PI: 6.5008 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 82 | 103 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f+r G C++Gd+C FaHg RWR80618.1 82 VTCPEFRR-GGCPRGDSCEFAHG 103 68******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MLKGLSQSLF EISKPRFSEI KPTGCFSNSS ETVYETDEFR MYTFKIKWCN KTRTHDWTEC 60 PYAHRGEKAR RRDPRKFNYY GVTCPEFRRG GCPRGDSCEF AHGVFEFWLH PERYRTRACT 120 AGQYCRRKVC FFAHTPEQLR IGSEFMQDTA YHRIYLDGLD GGGRFTSTAS PENEFSFMGD 180 GDFVVSMAQL KMDDGEELET CLGGGIPNAP DIDWISELVR FE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 6e-62 | C3H family protein |