PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR80601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 14964.3 Da PI: 7.9297 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.5 | 2.2e-13 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L+YP GA+sV+Ca+C++V RWR80601.1 27 CSGCRNVLAYPHGATSVCCAVCNAV 51 ************************9 PP | |||||||
2 | zf-LSD1 | 36.6 | 7.3e-12 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC++ L Y rGA+sV+C++C+tV RWR80601.1 66 CGGCHIHLTYMRGATSVQCSCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 44.5 | 2.6e-14 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL+Y +GA+sV+Ca+C++V RWR80601.1 104 CGNCRTLLMYQYGARSVKCAVCNFV 128 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence |
MPVPLAPYPT PPAPFTPPNG VQSQLVCSGC RNVLAYPHGA TSVCCAVCNA VTTVPPPGTE 60 MAQLVCGGCH IHLTYMRGAT SVQCSCCHTV NLALEANQVA HVNCGNCRTL LMYQYGARSV 120 KCAVCNFVTS VGASTSTELK FNN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-62 | LSD family protein |