PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80159.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 429aa MW: 47398.2 Da PI: 5.064

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1e-26	37	125	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rWt+qe+l+Li++++ e r+rr++ + +p+W++v++++r++g++r+p+qC+++w+nl++++kki+e+e k++ es s +++ ++ RWR80159.1 37 RWTRQEILVLIQGKKVAEGRVRRRRgdgsvQSEPKWASVAAYCRRHGVSRGPVQCRKRWSNLAGDFKKIREWEMKKSGESDSFWVMRSD 125 8*******************96555667*******************************************98888888877665 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MALDEVPFGD APGANGVPSA PNGRHDDEST RPPRLPRWTR QEILVLIQGK KVAEGRVRRR 60 RGDGSVQSEP KWASVAAYCR RHGVSRGPVQ CRKRWSNLAG DFKKIREWEM KKSGESDSFW 120 VMRSDVRRER RLPGFFDREV YDVLDREEAR KSGGEEVVMV EEEEEEEEDE EVIFDSGRAA 180 AAEEGLFSDC EQSGQEEGKG SAEEEVAAMG ESPVGVAAPT PISEKLCLGY LDAGLESDGA 240 ITLLEVLIFV DRGWSAPLFI KCPICTDTVI CWPLQNREEK GKKKNRATPI QEEEEEERGG 300 GAGAAEAAAG HKTSMAAEGS GHRISNKQQA LKQPASSRHR ISNRKQASKK AAGVEAASIE 360 PKQHLPPLSP FFFFFFFLSL SSSSLPLSFP PFSFSILLLC SYDENGWQMP FRKGPSLITE 420 GLTLDSLPP

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MALDEVPFGD APGANGVPSA PNGRHDDEST RPPRLPRWTR QEILVLIQGK KVAEGRVRRR  60
RGDGSVQSEP KWASVAAYCR RHGVSRGPVQ CRKRWSNLAG DFKKIREWEM KKSGESDSFW  120
VMRSDVRRER RLPGFFDREV YDVLDREEAR KSGGEEVVMV EEEEEEEEDE EVIFDSGRAA  180
AAEEGLFSDC EQSGQEEGKG SAEEEVAAMG ESPVGVAAPT PISEKLCLGY LDAGLESDGA  240
ITLLEVLIFV DRGWSAPLFI KCPICTDTVI CWPLQNREEK GKKKNRATPI QEEEEEERGG  300
GAGAAEAAAG HKTSMAAEGS GHRISNKQQA LKQPASSRHR ISNRKQASKK AAGVEAASIE  360
PKQHLPPLSP FFFFFFFLSL SSSSLPLSFP PFSFSILLLC SYDENGWQMP FRKGPSLITE  420
GLTLDSLPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-56	Trihelix family protein