PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80132.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 268aa MW: 28772.4 Da PI: 7.9114

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80132.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	1	18	10	27
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rtG Ck+G CkF+H+p RWR80132.1 1 MRTGACKFGIACKFHHPP 18 8***************97 PP
2	zf-CCCH	33.8	5.9e-11	117	142	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tG Ck+G +Ck++H++ RWR80132.1 117 DQPDCQFYLKTGRCKFGQSCKYHHPK 142 6899********************96 PP
3	zf-CCCH	28.9	1.9e-09	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C + +G+CkyG+ Ck+ H+ RWR80132.1 162 PGQAICTSYGMNGICKYGSACKYDHP 187 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MRTGACKFGI ACKFHHPPPA QLGAVLSIAH PAYDSKGSSA SASSGLPYAG GIPAWSLPSA 60 PYMSNPHMEG HAAYMPVVLS PQGVISTQRD WSFYTNSISP VLTTEALGSN QLPQRPDQPD 120 CQFYLKTGRC KFGQSCKYHH PKQMNASEVN STLGPLGLPL RPGQAICTSY GMNGICKYGS 180 ACKYDHPVSG YYSYSLPLLS IPDQTLIPYY CNSPVTCSPS ETSPSQSLNL QSHPSKPEST 240 SFKQNPDMEA PEYTQLQTVS PNTAPASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-27	C3H family protein