PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80013.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 271aa MW: 31079.7 Da PI: 10.5332

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.6	1.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s RWR80013.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	15.2	8.7e-07	81	108	8	35
K-box 8 sleeakaeslqqelakLkkeienLqreq 35 +++++++s++qe+ kLk+++e Lqr+q RWR80013.1 81 TVSTRETQSSHQEYLKLKARVEALQRSQ 108 478899*******************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPET TVSTRETQSS HQEYLKLKAR VEALQRSQSF LSTLSTTVFH 120 IDVVTHSEHN DISKYKAGSF RTLHPNIPEN LRSNDCSILS PITSLLKKLT FRPDTASKQR 180 IVALTFLTRS SLAPQNKRVS STNCKWLTAG EFLTTLKPSK RTCTNHLCDH STQRFCHYKE 240 EERGQRIPLS KPPFCLKVAL RRTIHQNREP S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-62	MIKC_MADS family protein