PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79787.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 1191aa MW: 132644 Da PI: 9.1144

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	5.8e-11	46	87	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W++eE +++++a +++G++ Wk++a+ + +R+++++ s +++ RWR79787.1 46 QWSKEELQRFYEAYRKYGKE-WKKVASVLR-NRSAEMVESLYNM 87 6*****************.*****.****9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1191 aa Download sequence
MTSTRKNRIA NKRFSKVNEE SPDKDAGNSS KSRLRKRKLL DMSGSQWSKE ELQRFYEAYR 60 KYGKEWKKVA SVLRNRSAEM VESLYNMNRA YLSLPEGLSS VAGLIAMMTD HYNMLEVTQG 120 SESERESNDG VSTSQKPQRR RGKLQMSVAK GLNGPFLDLL QCPPAPSYGC LSLLKKRRSG 180 GGRPIPVGKR TPRFPVSYPC SKDEREKIVL ASKRGLKRDK DASDDDVAHV AALALAEASH 240 RGGSPQVSRT PSRSEHTRPS PVQNGERKHD ESEVASTKVI GSALYEERFE GSLGSREADS 300 GDFSREATEG AGRVEIEKQV KKVQGKKPKV LAMGNDHFDD IREACSGTEE GLALRTVKDE 360 IETEVTNVNV ARSSPKGPRK RSRQLFSRDE SSALDALQTL ADISLNYHVP LSAGDSAMSA 420 NLRREKPKAS KNKAKGHSSV VEVDINAPKE VDKDSSLNVS ATAEGKQQHY QATSRIQKRK 480 RKSSTAKMLK SEDYGDSILS ESQRAEAATE EVKRLTSKAK RISQTVPLTK QGASVRQPEF 540 SSDSDARRTG APLTESTAHP SAINQIYSQT KYRSRRKMGL QKIFQEPRSS ENVGNVRPNK 600 LSRMVHDKAL DLKNGLSHCL LSQLLRRWCV FEWFYSAIDY PWFAKSEFVE YLNHVGLGHI 660 PRLTRVEWGV IRSSLGKPRR FSKQFLQEER EKLEQYRESV RTHYAELRAG TREGLATDLA 720 RPLSVGQRVI ACHPRTREIH DGSVLTVDRN RCRVQFDWPE LGVEFVKDID CMPLNPLENM 780 PEALRRQNTA VDRFRENINW IKADSESEEW RSGGSIKLHQ SENLEKVDGF CQVTSSNYPM 840 NTLLSPAKGD TIDEVLQAKA AANEVASAQA TYSQPYTFAQ IQAREADIKA LSELNRALDK 900 KEALVLELKH MNEEVESKHK NEEGMGNQKG GDSFTDMDHH FKQQYAMVLL QLKAANDQVS 960 SALVCLRQRN TFHGNSMPQW VSRPMPNLGG CGVPSSSFDR PTFISQELGS HVIGIVESSR 1020 RKARTMVHEA MEVASSSKEA EDALARVGEA DSTNSQHPGA DSGLPAVGSC TPDTRYGTAA 1080 FQDQPTCLLE TTAVHAPNSK QNNSDGNELQ APSELISACV ATLLMIQTCT ERPPDEVVQI 1140 LDMAVTSLQP CCPQNLDIYI EIQKCMGRVK HQILARIPTQ TGILTTELQS I

Sequence ? help Back to Top

Protein Sequence Length: 1191 aa Download sequence

MTSTRKNRIA NKRFSKVNEE SPDKDAGNSS KSRLRKRKLL DMSGSQWSKE ELQRFYEAYR  60
KYGKEWKKVA SVLRNRSAEM VESLYNMNRA YLSLPEGLSS VAGLIAMMTD HYNMLEVTQG  120
SESERESNDG VSTSQKPQRR RGKLQMSVAK GLNGPFLDLL QCPPAPSYGC LSLLKKRRSG  180
GGRPIPVGKR TPRFPVSYPC SKDEREKIVL ASKRGLKRDK DASDDDVAHV AALALAEASH  240
RGGSPQVSRT PSRSEHTRPS PVQNGERKHD ESEVASTKVI GSALYEERFE GSLGSREADS  300
GDFSREATEG AGRVEIEKQV KKVQGKKPKV LAMGNDHFDD IREACSGTEE GLALRTVKDE  360
IETEVTNVNV ARSSPKGPRK RSRQLFSRDE SSALDALQTL ADISLNYHVP LSAGDSAMSA  420
NLRREKPKAS KNKAKGHSSV VEVDINAPKE VDKDSSLNVS ATAEGKQQHY QATSRIQKRK  480
RKSSTAKMLK SEDYGDSILS ESQRAEAATE EVKRLTSKAK RISQTVPLTK QGASVRQPEF  540
SSDSDARRTG APLTESTAHP SAINQIYSQT KYRSRRKMGL QKIFQEPRSS ENVGNVRPNK  600
LSRMVHDKAL DLKNGLSHCL LSQLLRRWCV FEWFYSAIDY PWFAKSEFVE YLNHVGLGHI  660
PRLTRVEWGV IRSSLGKPRR FSKQFLQEER EKLEQYRESV RTHYAELRAG TREGLATDLA  720
RPLSVGQRVI ACHPRTREIH DGSVLTVDRN RCRVQFDWPE LGVEFVKDID CMPLNPLENM  780
PEALRRQNTA VDRFRENINW IKADSESEEW RSGGSIKLHQ SENLEKVDGF CQVTSSNYPM  840
NTLLSPAKGD TIDEVLQAKA AANEVASAQA TYSQPYTFAQ IQAREADIKA LSELNRALDK  900
KEALVLELKH MNEEVESKHK NEEGMGNQKG GDSFTDMDHH FKQQYAMVLL QLKAANDQVS  960
SALVCLRQRN TFHGNSMPQW VSRPMPNLGG CGVPSSSFDR PTFISQELGS HVIGIVESSR  1020
RKARTMVHEA MEVASSSKEA EDALARVGEA DSTNSQHPGA DSGLPAVGSC TPDTRYGTAA  1080
FQDQPTCLLE TTAVHAPNSK QNNSDGNELQ APSELISACV ATLLMIQTCT ERPPDEVVQI  1140
LDMAVTSLQP CCPQNLDIYI EIQKCMGRVK HQILARIPTQ TGILTTELQS I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	39	LRKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein