PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79708.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 545aa MW: 59112.9 Da PI: 4.7912

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l RWR79708.1 41 KGPWTSAEDAMLVEYVKEHGEGNWNAVQKHSGLLRCGKSCRLRWANHL 88 79****************************99********9986 PP
2	Myb_DNA-binding	48.2	2.5e-15	94	137	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+ E+ l+++++++lG++ W++ a+ ++ gRt++++k++w++ RWR79708.1 94 KGAFTPAEERLIIELHAKLGNK-WARMAALLP-GRTDNEIKNYWNT 137 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MSRTRTNDSG DRMVSKDQTD SSSIDEGSCG GVLGGVGVLK KGPWTSAEDA MLVEYVKEHG 60 EGNWNAVQKH SGLLRCGKSC RLRWANHLRP NLKKGAFTPA EERLIIELHA KLGNKWARMA 120 ALLPGRTDNE IKNYWNTRVK RLQRAGLPLY PPDVCLQALN DGQQNQDYSE SSGGDALHND 180 VLDTNNYDIP EVFFDNLEAN HGPLSYAPAL PNIYVSSMRT QALGSLKNFN SLPTTVKQAK 240 RTRESDALLP GFLGCDTDRL PSFDPAQIGS CKKVCRPFGP LFPYDASPNE NLAPFGVSIT 300 GSNAFPNGNF SASDPLSKVV KLELPSLQVP NTVINSWCTC PPAPPSPPPL ESINAYIQSP 360 PAMQVQSDYY SPWNSGLLQE VIHESHAKNR TSDKSLSSSV VTTADGNGHS TMELYEAEWG 420 DFGDPRSPLG CSTASVLSEH TPISGISLDE SPPVKALPDG GDKEISAQLD FPRHDALLEF 480 DCFEQSSDYL AALLGEDFGS EYKHVASPTS ALSQGWGFGS CAWNNMPAAC QMSELPPDDI 540 YGASE

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MSRTRTNDSG DRMVSKDQTD SSSIDEGSCG GVLGGVGVLK KGPWTSAEDA MLVEYVKEHG  60
EGNWNAVQKH SGLLRCGKSC RLRWANHLRP NLKKGAFTPA EERLIIELHA KLGNKWARMA  120
ALLPGRTDNE IKNYWNTRVK RLQRAGLPLY PPDVCLQALN DGQQNQDYSE SSGGDALHND  180
VLDTNNYDIP EVFFDNLEAN HGPLSYAPAL PNIYVSSMRT QALGSLKNFN SLPTTVKQAK  240
RTRESDALLP GFLGCDTDRL PSFDPAQIGS CKKVCRPFGP LFPYDASPNE NLAPFGVSIT  300
GSNAFPNGNF SASDPLSKVV KLELPSLQVP NTVINSWCTC PPAPPSPPPL ESINAYIQSP  360
PAMQVQSDYY SPWNSGLLQE VIHESHAKNR TSDKSLSSSV VTTADGNGHS TMELYEAEWG  420
DFGDPRSPLG CSTASVLSEH TPISGISLDE SPPVKALPDG GDKEISAQLD FPRHDALLEF  480
DCFEQSSDYL AALLGEDFGS EYKHVASPTS ALSQGWGFGS CAWNNMPAAC QMSELPPDDI  540
YGASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-100	MYB family protein