PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR79519.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family NF-YA
Protein Properties Length: 342aa    MW: 36598.8 Da    PI: 9.2703
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR79519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.2e-32184240158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep+YVNaKQy++Il+RR +Rakle+++k+  k+rkpylheSRh hA++R+RgsgGrF
  RWR79519.1 184 DEPIYVNAKQYRAILRRRDARAKLEAQNKV-VKARKPYLHESRHLHAMKRARGSGGRF 240
                 79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MHDISNMDSK QGRAYSTSPC GVSCPSRWSS TGSAIPQSSV SGSLNLNLNS ATQHCQHAKQ  60
LGLQLRDQES SSTQSTGQSH HEMASMGLVN SHGHYISGQS GYDGTLGRQV NGHMKSVLSL  120
GTPDLVFSSA KVDYTQPVAC VPYPYANPYV SGALAAYGPQ TVIHPQMLGI MSTRVPLPLD  180
FSDDEPIYVN AKQYRAILRR RDARAKLEAQ NKVVKARKPY LHESRHLHAM KRARGSGGRF  240
LNMKKLQPSD SSPHTEDANI SSGSALLQLG GSLTESEALQ LENSNAGASA TCSDVTSVSI  300
NDGIFQKANI GLSGFHSYTR GNLQHGGGIV HSGAQHRVSV TQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.19e-50NF-YA family protein