PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78815.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 667aa MW: 71205.4 Da PI: 6.7213

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg RWR78815.1 279 PCPEFRK-GTCRNGDACEYAHG 299 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MCSGPDSSKR RLSPPGFSME SGLQKQKTDS CRCSTLLELS AADDLASFKK AVEEGEAALE 60 EAALWYGRRI GTRQMGFDKR TPLMIAALYG SVEILKYILS KGGVDVNRAC GSDGATALHC 120 AAAGGSPSAT EIVRLLVAAS ASVESVDATG NRAGDVLPAS SPAMKPKKKV LEMMLKKVAE 180 GEEETMASSA SLDELQTQTQ LQSQPLDQGS DGKKEYPIDL SLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRN GDACEYAHGV 300 FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAMPSPR SSSSSPPLDL 360 AGISPLALGS PSGLMMPTST PPMSPVSSPG IGGGLWPPPP LQLPSSRLKS ALSARDLQMD 420 MDMAGMEMDE LKNLSALAAL AGSRSGKFNH YGSTAQASLD DILASLDSTS LSQLQGLAMK 480 SPHVRQNLQS GFSSPMRTAS SGLDPSLSVA AAVMNSRAAA FAKRSQSFSE RALMNRYTGG 540 LNTAATATTT TPIGSTSSML SDWGSPNGKL DWGVQGDELH KLRKSASFGI RSNGGNVGAM 600 GAMSSVEEPD VSWVQSLVKD GPATSAGWPA SEQQYQLGGG GGSDFHAPEM FSPWAEQLYM 660 EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MCSGPDSSKR RLSPPGFSME SGLQKQKTDS CRCSTLLELS AADDLASFKK AVEEGEAALE  60
EAALWYGRRI GTRQMGFDKR TPLMIAALYG SVEILKYILS KGGVDVNRAC GSDGATALHC  120
AAAGGSPSAT EIVRLLVAAS ASVESVDATG NRAGDVLPAS SPAMKPKKKV LEMMLKKVAE  180
GEEETMASSA SLDELQTQTQ LQSQPLDQGS DGKKEYPIDL SLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRN GDACEYAHGV  300
FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAMPSPR SSSSSPPLDL  360
AGISPLALGS PSGLMMPTST PPMSPVSSPG IGGGLWPPPP LQLPSSRLKS ALSARDLQMD  420
MDMAGMEMDE LKNLSALAAL AGSRSGKFNH YGSTAQASLD DILASLDSTS LSQLQGLAMK  480
SPHVRQNLQS GFSSPMRTAS SGLDPSLSVA AAVMNSRAAA FAKRSQSFSE RALMNRYTGG  540
LNTAATATTT TPIGSTSSML SDWGSPNGKL DWGVQGDELH KLRKSASFGI RSNGGNVGAM  600
GAMSSVEEPD VSWVQSLVKD GPATSAGWPA SEQQYQLGGG GGSDFHAPEM FSPWAEQLYM  660
EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-152	C3H family protein