PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78540.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 327aa    MW: 37230.4 Da    PI: 9.3263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08548344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT eE   + ++ + l  +   +W++Ia+ ++ g+t +q++ ++
       RWR78540.1  5 EWTREENNFFENLLAILNLDepkSWEKIAAQVP-GKTVEQVQKHY 48
                     7*****************99*************.**********9 PP
2Myb_DNA-binding44.73e-14128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + k +G+g+W++I+r   k Rt+ q+ s+ qky
       RWR78540.1 128 PWTEDEHRLFLAGLKHYGKGDWRSISRNYIKSRTPTQVASHAQKY 172
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MENEEWTREE NNFFENLLAI LNLDEPKSWE KIAAQVPGKT VEQVQKHYEA LVEDLKLIES  60
GSFPLPHYRE EKEGFSKEVM GYGEETEGMK KETKVMKKDI REGTEGMRKD DGEGTQVNDH  120
QQRKKGTPWT EDEHRLFLAG LKHYGKGDWR SISRNYIKSR TPTQVASHAQ KYFIRRNSSR  180
TKERRRPSIH DITGANGSAH VTRINSNAAE LASNNQICIV GHATQGQAPN IQMGGRRAQV  240
YLSGPMSNQY KYNGILENLH PPDHHQSMVS GSYQPSSTMD TMGSDYVHGP SVHSPSNHQS  300
TMHMRRAGPS HSSASNHQLR MHKRTER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-48MYB family protein