PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78263.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 1170aa    MW: 127580 Da    PI: 6.257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.9e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++  +++    +++ +q+kvWFqNrR +ek+
  RWR78263.1 17 KYVRYTPEQVEALERLYHECPKPSSVRRQQVIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                5679*****************************************************97 PP
2START180.78.3e-571613692205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v e+l+d++ W ++++++++++v+ +g  g+l+l +++l
  RWR78263.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVTEILKDRPSWLRDCRSVDVVNVLPTGngGTLELLYMQL 258
                 789*******************************************************.7777777777****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++v++++S++s+q  p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++
  RWR78263.1 259 YAPTTLAPaRDFWLLRYTSLLEDGSLVVCERSLSSTQGGPSmppAQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPSSVPEVLRPLYESSAVLAQ 357
                 *************************************99999999****************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  RWR78263.1 358 KTTMAALRQLRQ 369
                 ********9876 PP
3START1563e-4952170427205
                 XCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS- CS
       START  27 sengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagd 122
                 +e+g++++ +++ s++++g a+ra+g+v  +++  v e+l+d++ W ++++++++++v+ +g  g+l+l +++l+a+++l+p Rdf+ +Ry+  l++g+
  RWR78263.1 521 EEPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVTEILKDRPSWLRDCRSVDVVNVLPTGngGTLELLYMQLYAPTTLAPaRDFWLLRYTSLLEDGS 618
                 68999****************************.7777777777******************************************************* PP

                 EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 123 wvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                 +v++++S++s+q  p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++kt++a+l+++++
  RWR78263.1 619 LVVCERSLSSTQGGPSmppAQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPSSVPEVLRPLYESSAVLAQKTTMAALRQLRQ 704
                 ************99999999**************************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1170 aa     Download sequence    
MAVTSCKEVK SGMDPGKYVR YTPEQVEALE RLYHECPKPS SVRRQQVIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLHGVNRKLT AMNKLLMEEN HRLQKQVSQL VYENGYFRQQ  120
TQNTTLATTD TSCESVVTNG QHHLTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV TEILKDRPSW LRDCRSVDVV  240
NVLPTGNGGT LELLYMQLYA PTTLAPARDF WLLRYTSLLE DGSLVVCERS LSSTQGGPSM  300
PPAQNFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPSS VPEVLRPLYE SSAVLAQKTT  360
MAALRQLRQI AQEVSPSTVT AWGRRPAALR ALGHRLSRGF NEALNGFTDE GWTIMGNDGI  420
DDVTILTNSS PSKMTDVTFA DGFSSISSAV LCAKASMLLQ NVPPAVLLRF LREHRSEWAD  480
SSIDAYSAGA AKANPSGLPA SQIVGFGGQV ILPLAHTIEH EEPGPDSIGI VAISHGCTGV  540
AARACGLVGL EPTRVTEILK DRPSWLRDCR SVDVVNVLPT GNGGTLELLY MQLYAPTTLA  600
PARDFWLLRY TSLLEDGSLV VCERSLSSTQ GGPSMPPAQN FVRAEMLPSG YLIRPCEGGG  660
SIIHIVDHMD LEPSSVPEVL RPLYESSAVL AQKTTMAALR QLRQIAQEVS PSTVTAWGRR  720
PAALRALGHR LSRGFNEALN GFTDEGWTIM GNDGIDDVTI LTNSSPSKMT DVTFADGFSS  780
ISSAVLCAKA SMLLQNVPPA VLLRFLREHR SEWADSSIDA YSAGAAKANP SGLPASQIVG  840
FGGQVILPLA HTIEHEEFLE MIKLENISHM DNNMMPHELF LLQLCSGVDE NAVGSYAELI  900
FAPIDASFGD DSPLLPSGFR IIPLDSRVDP PSPNRTLDLA SALEVGPAGN RIPGNFSGNS  960
GSMRSVMTIA FQFAYENHLQ ENVAAMARQY VRSIISSVQR VAMALSPSRL SFHDGLRSPP  1020
GTPEALTLAR WICCSYRCYL GSELLKSGSH GGESLLKMLW HHSDAIMCCS LKALPVFTFA  1080
NQAGLDMLET TFVALQDITL DKIFDDHGRK ALYTEFPLIM QQGFTCLQGG VCVSSMGRPI  1140
SYERAVAWKV LNEEDNTHCM AFMFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein