PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78137.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 404aa    MW: 44442.9 Da    PI: 7.2601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-09138158526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck+Gd+C FaHg
  RWR78137.1 138 ACPDFRK-GSCKRGDSCEFAHG 158
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MMLGEGNRLN PTVQIPPWTL FEDPTAGMLY PHPVSGVSVS PDGTGDFSPF FMGEALTALQ  60
RFLPSNERAF DDPNSEISGH DSDIAVDEFS CDEFRMYEFK VRRCARGRSH DWTECPFAHP  120
GEKARRRDPR KFHYSGTACP DFRKGSCKRG DSCEFAHGVF ECWLHPSRYR TQPCKDGTAC  180
RRRVCFFAHT AEQLRVLAQQ QSPRTAAAAA AAAATVESYD GSPLRHSFPK SALSSSPTST  240
LISPPHSPTS DSPPLSPNSP SIRRPMLSNS VNEVLALSLR QLQLSKSQKS PPASWAMHQL  300
GSSPRGMNLR PIFSSLPSTP TASLTPTAAA SGGIGWTDIW EKGCFLQQQE EEKEEPMERV  360
ESGRNLRAKI YEKLSKENSV EIVETNAVVA AGAPDVGWIS ELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-94C3H family protein