PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78083.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 363aa MW: 41582 Da PI: 6.2509

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.3e-34	35	127	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+++i+ed+ +++++sws+ nsf+v+d ++f+ ++Lpk+Fkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+k+ll+kik RWR78083.1 35 FLTKIFDIVEDPGTDSVVSWSQARNSFIVWDVRQFSANLLPKHFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKKIK 122 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++++ RWR78083.1 123 RRRNA 127 975 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MEGVLVKDEV ISGSSFPDLS PRPMEGLHET GPPPFLTKIF DIVEDPGTDS VVSWSQARNS 60 FIVWDVRQFS ANLLPKHFKH GNFSSFIRQL NTYGFRKVDP DRWEFANEGF LGGQKHLLKK 120 IKRRRNASQN IQQHGMGNCV ELGHFGLETE IERLRRDRHI LMVEIVRLKK QQQNTRAQLA 180 AMEERLQFTE RKQQQMMAFL ARALRNPTFI LQLIQHHREK KELGSCTGKK RRLPAAGSSE 240 NLQSLRGEAI SPMGMGSQIG SFAHQPQEEV TIESEIETLF SAMDAESSSS NRNRKAEVID 300 SSGNPEDLIW EQLLYENLLK GENDEYDQAE INVEVEDLAA KFPDWGDDVH VLAEKMEFLE 360 RKH

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MEGVLVKDEV ISGSSFPDLS PRPMEGLHET GPPPFLTKIF DIVEDPGTDS VVSWSQARNS  60
FIVWDVRQFS ANLLPKHFKH GNFSSFIRQL NTYGFRKVDP DRWEFANEGF LGGQKHLLKK  120
IKRRRNASQN IQQHGMGNCV ELGHFGLETE IERLRRDRHI LMVEIVRLKK QQQNTRAQLA  180
AMEERLQFTE RKQQQMMAFL ARALRNPTFI LQLIQHHREK KELGSCTGKK RRLPAAGSSE  240
NLQSLRGEAI SPMGMGSQIG SFAHQPQEEV TIESEIETLF SAMDAESSSS NRNRKAEVID  300
SSGNPEDLIW EQLLYENLLK GENDEYDQAE INVEVEDLAA KFPDWGDDVH VLAEKMEFLE  360
RKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	LKKIKRR
2	153	158	RLRRDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-109	HSF family protein