PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR77995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18438.3 Da PI: 6.482 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.4 | 2.9e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C ++Cvl+p++ +++q++++ +++k+FG++ ++++++a+p ++r+++++sl+yeA+ r+ +Pv+Gavg+++++ ++l+q+++e+ RWR77995.1 2 SCNGCRVLRKGCGESCVLRPCLmwidtADAQANATVFLAKFFGRAGLMSFISAVPINQRPALFRSLLYEACGRTVNPVHGAVGLLWTGDWHLCQTAVET 100 6*********************9999777889****************************************************************999 PP DUF260 95 all 97 +l+ RWR77995.1 101 VLR 103 876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence |
MSCNGCRVLR KGCGESCVLR PCLMWIDTAD AQANATVFLA KFFGRAGLMS FISAVPINQR 60 PALFRSLLYE ACGRTVNPVH GAVGLLWTGD WHLCQTAVET VLRGGALRQL EDVPPPEVGK 120 EFGSGSEFDD VARLQPCDLD LSLKWSPILA KSKGESRPPM ESEGSAVIGT I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-65 | LBD family protein |