PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77917.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 268aa    MW: 30389.4 Da    PI: 8.5749
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-19122176256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +k+ ++tkeq   Le+ F+++ +++ ++++ LA++l+L  rqV vWFqNrRa+ k
  RWR77917.1 122 KKKLRLTKEQSALLEDNFKEHTTLDPKQKKALAAQLNLRPRQVEVWFQNRRARTK 176
                 678899***********************************************98 PP
2HD-ZIP_I/II121.63.9e-39122211191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLE++F+e+++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr+++alkeen+rL+kev+eL+ +l
   RWR77917.1 122 KKKLRLTKEQSALLEDNFKEHTTLDPKQKKALAAQLNLRPRQVEVWFQNRRARTKLKQTEVECEYLKRCCQALKEENRRLQKEVHELK-AL 211
                  59*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGTEDVCNAG LVLGLNIDGV EEKRLQSKKY QQQNLVCFEF DQLSPMEGLE TCLTLSLVPK  60
KINKNKAGDH VQVVHQSSSQ STVSSFSNPN HDITSSNRER DDFEVERLSL RVSDEEDEGS  120
AKKKLRLTKE QSALLEDNFK EHTTLDPKQK KALAAQLNLR PRQVEVWFQN RRARTKLKQT  180
EVECEYLKRC CQALKEENRR LQKEVHELKA LKLASPLYMH VPAATLTMCP SCERIGSGSK  240
NPTNGPFAVA PRSHHLYNSS IHHQSPAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-70HD-ZIP family protein