PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77900.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 364aa MW: 40220.5 Da PI: 7.7149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	187	234	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq RWR77900.1 187 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 234 5699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEMSSVRWLT ELGMEDPTFI NQCEMNALDQ LTAQHIAAAL GEDFQHSFSS ESYSSYPSFT 60 PSSNNTFSGS SLEASHAGVV ERPTKQLRTS SWNSSTTDHI SVPDASSPNI LSFGKPNSPI 120 NHQQFYGNMV GGSVRHKDET VSPKSSTIPG DILISQGSFV NKSYESKGGQ GSKRSSVVST 180 KPPSHTQDHI IAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYV KQLQEKVNTL 240 EELTVKKTFE SVVFVKKSQI SMDDDLSSSD ENFDGSSTKS LPEIEARVSD KSILIKIHCE 300 KRKGVLVKTL AEIEKLHLSV VNTSVMPFAS FALDITVMAQ MEEDFNMTVK DLVKNLRCFL 360 RKLT

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEMSSVRWLT ELGMEDPTFI NQCEMNALDQ LTAQHIAAAL GEDFQHSFSS ESYSSYPSFT  60
PSSNNTFSGS SLEASHAGVV ERPTKQLRTS SWNSSTTDHI SVPDASSPNI LSFGKPNSPI  120
NHQQFYGNMV GGSVRHKDET VSPKSSTIPG DILISQGSFV NKSYESKGGQ GSKRSSVVST  180
KPPSHTQDHI IAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYV KQLQEKVNTL  240
EELTVKKTFE SVVFVKKSQI SMDDDLSSSD ENFDGSSTKS LPEIEARVSD KSILIKIHCE  300
KRKGVLVKTL AEIEKLHLSV VNTSVMPFAS FALDITVMAQ MEEDFNMTVK DLVKNLRCFL  360
RKLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	198	ERKRRE
2	194	199	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-65	bHLH family protein