PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77822.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 446aa MW: 48472.1 Da PI: 9.7332

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.8	1.3e-42	143	218	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak y+ rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+ RWR77822.1 143 RCQVEGCKMDLTGAKPYYCRHKVCGMHSKSPKVIVNGMEQRFCQQCSRFHQLPEFDEGKRSCRRRLAGHNERRRKP 218 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MAQMAGVGFM LQPQQHHLKD QRAVTSQTHP SFFPLDLSLA SFVFKTPLPF LSFPALPHLL 60 QSPSKGQERN VEREMDIGSS SSAATGASAS TDSMNGLKFG KKIYFEDVGS GGSAKTAALP 120 GSSSSSPAPR RGRGVVQGGQ PPRCQVEGCK MDLTGAKPYY CRHKVCGMHS KSPKVIVNGM 180 EQRFCQQCSR FHQLPEFDEG KRSCRRRLAG HNERRRKPPL GSLTSRYGRL PSSFNEDSSR 240 AGSFLDFAYP RSTGREVWPT VRVGERESGN QSTASSGKHL PHLWQGSIEA PSANVFTHGT 300 HQYLQGSAGG TPFPPSETPS SECFAGVSNT GCALSLLSSQ PWAPRNRNSG ITVNNFMDEK 360 GAPMDQSSHG AIANNLMSNS WSFKSQEASS SSHIIPHQLG QVQVPESVSS QFSGELDSPR 420 QESKQFMDLR QSRGYGSSSN QMHWSL

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MAQMAGVGFM LQPQQHHLKD QRAVTSQTHP SFFPLDLSLA SFVFKTPLPF LSFPALPHLL  60
QSPSKGQERN VEREMDIGSS SSAATGASAS TDSMNGLKFG KKIYFEDVGS GGSAKTAALP  120
GSSSSSPAPR RGRGVVQGGQ PPRCQVEGCK MDLTGAKPYY CRHKVCGMHS KSPKVIVNGM  180
EQRFCQQCSR FHQLPEFDEG KRSCRRRLAG HNERRRKPPL GSLTSRYGRL PSSFNEDSSR  240
AGSFLDFAYP RSTGREVWPT VRVGERESGN QSTASSGKHL PHLWQGSIEA PSANVFTHGT  300
HQYLQGSAGG TPFPPSETPS SECFAGVSNT GCALSLLSSQ PWAPRNRNSG ITVNNFMDEK  360
GAPMDQSSHG AIANNLMSNS WSFKSQEASS SSHIIPHQLG QVQVPESVSS QFSGELDSPR  420
QESKQFMDLR QSRGYGSSSN QMHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	7e-52	SBP family protein