PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR77750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | NF-YA | ||||||||
Protein Properties | Length: 253aa MW: 27178.6 Da PI: 9.4663 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.8 | 7.6e-33 | 167 | 223 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg gGrF RWR77750.1 167 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAMRRARGDGGRF 223 69****************************.**************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MPSRPKNASS IEPKVAGSSP ATTCSQPWWH GSGYTTVSPA VLSQSLLKSP SLEIPNGGAA 60 TKASSSQADV DMDNGAAVSK DIQSSAAQSD GNHAQEQQVH HATSKMPPIM AEYIAPHTQL 120 ELGHTVACAS YPYSDPYGIM TAYGTQPLVH PHILGMHRMA LPLEMTEEPV YVNAKQYHGI 180 LRRRQSRAKA ELEKKLIKVR KPYLHESRHQ HAMRRARGDG GRFLNTKKPN SGASIPTSEE 240 EAGSGAAAPA QSV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.2 | 1e-50 | NF-YA family protein |