PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77328.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 583aa MW: 63351.4 Da PI: 5.6096

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.8	8.5e-15	249	284	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp +Rrgp g+ktLCnaCGl++++k RWR77328.1 249 CLQCGTSEkaTPVMRRGPAGPKTLCNACGLKWAHKM 284 89******************************9875 PP
2	TCP	103.6	3.2e-32	360	460	6	101
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......kaaksaaks 97 + +++ hTkv+gR+RR+ ++a+caar+F+L++eLG+++d++ti WLl+q +pai+++tgt++ +a ++ +++ + ++++ + +++++ +s RWR77328.1 360 RASKDKHTKVEGRGRRIQMPATCAARIFQLTKELGHKSDGQTIRWLLEQTEPAIIAATGTGTVPAIATyVDGTLKIPTQSPFGDdndrrrRKRTF--NS 456 6789********************************************************88888555522222222221111122211122222..33 PP TCP 98 kksq 101 +++q RWR77328.1 457 NPPQ 460 3333 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MPESNLNPQP LNSRPPMYVD EDGHVHQLHD VPVLSGQIDD DGDAGDTVDP YDGQLDVDVL 60 EEGGGDGIGD DEMMDGEDEE YEEEEIQMDG EALPDPNLAV PLRCRSMNQL TLSFNGEVYI 120 YPSVSPDKVQ AVLLLLGGRE VASLMPGMQL VPSEQDYRGG ALVESGDIPQ QSNIPQRVAS 180 LLRFREKRKE RCYEKKIRYN VRKEVALRMQ RHKGQFACKA PTEEAVSTSS NWGSKQNRSQ 240 DDSPKEAICL QCGTSEKATP VMRRGPAGPK TLCNACGLKW AHKMEAKKQQ IKKEERELEQ 300 RMGGKGSGSS DDGFAAPLVV TQRIAPPATP QMATQQLVCL KMEPAVEKRR LEYVPLRQSR 360 ASKDKHTKVE GRGRRIQMPA TCAARIFQLT KELGHKSDGQ TIRWLLEQTE PAIIAATGTG 420 TVPAIATYVD GTLKIPTQSP FGDDNDRRRR KRTFNSNPPQ IQEKASLSTV STGLAPIGPT 480 TPATQNIVNL SNLGNLGNLG TQTFLMISPD AIGGPSNQQQ LWTFPAQTGP LINLSAGQPM 540 STIFSVVPGL NFATAVEVSS TAGSASTTMA GTTSTQVVSN SSK

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MPESNLNPQP LNSRPPMYVD EDGHVHQLHD VPVLSGQIDD DGDAGDTVDP YDGQLDVDVL  60
EEGGGDGIGD DEMMDGEDEE YEEEEIQMDG EALPDPNLAV PLRCRSMNQL TLSFNGEVYI  120
YPSVSPDKVQ AVLLLLGGRE VASLMPGMQL VPSEQDYRGG ALVESGDIPQ QSNIPQRVAS  180
LLRFREKRKE RCYEKKIRYN VRKEVALRMQ RHKGQFACKA PTEEAVSTSS NWGSKQNRSQ  240
DDSPKEAICL QCGTSEKATP VMRRGPAGPK TLCNACGLKW AHKMEAKKQQ IKKEERELEQ  300
RMGGKGSGSS DDGFAAPLVV TQRIAPPATP QMATQQLVCL KMEPAVEKRR LEYVPLRQSR  360
ASKDKHTKVE GRGRRIQMPA TCAARIFQLT KELGHKSDGQ TIRWLLEQTE PAIIAATGTG  420
TVPAIATYVD GTLKIPTQSP FGDDNDRRRR KRTFNSNPPQ IQEKASLSTV STGLAPIGPT  480
TPATQNIVNL SNLGNLGNLG TQTFLMISPD AIGGPSNQQQ LWTFPAQTGP LINLSAGQPM  540
STIFSVVPGL NFATAVEVSS TAGSASTTMA GTTSTQVVSN SSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	4e-50	GATA family protein