PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77323.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 501aa MW: 55197.3 Da PI: 6.8214

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.1	1.9e-07	217	257	1	36
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkf 36 s y+GV++++++gr++A+++d + g ++ ++++lg+f RWR77323.1 217 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGNF 257 57*****************665564477446****98 PP
2	AP2	47.9	3.3e-15	356	407	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt+ eAa+a++ a+ k++g RWR77323.1 356 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEVEAAEAYDVAAIKFRG 407 57**************988532...5******99**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MAHASNSWLS FPYSPMEMML FQMPSTRPSP HVGGGYSSDG YYSSPYCFLE PSNGNEERAC 60 VEAPFPSSTE DNKPAERETE AVSMMIPFPY LQMHQPLLKL EDFFLGQSLP LAQCAETTQE 120 LESSSLSCIY EQDMKAVATD SRFQTLSANS GSEIDDSVSV NGISSYSSGG GNGLVLTGGC 180 GRTLMAPCQS LEKVVVSGAV TAKAKKASTD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC 240 RREGQSRKGR QVYLGNFCLS KIVYTCSLVD SFQVQIVVQC RSFIDEICFL LGGYDKEEKA 300 ARAYDLAALK YWGSTATTNF PVSDYSKEIE EMKRMTRQEF VASLRRKSTG FSRGASIYRG 360 VTRHHQHGRW QARIGRVAGN KDLYLGTFGT EVEAAEAYDV AAIKFRGINA VTNFEINRYD 420 VDAIANSTLP IGAAAKRMKF SLPAEQEPKH IQPGIDIVSP LNLCSQENSA TALLQNLLCL 480 HPTASVGSPV GPELDLCRLL Q

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MAHASNSWLS FPYSPMEMML FQMPSTRPSP HVGGGYSSDG YYSSPYCFLE PSNGNEERAC  60
VEAPFPSSTE DNKPAERETE AVSMMIPFPY LQMHQPLLKL EDFFLGQSLP LAQCAETTQE  120
LESSSLSCIY EQDMKAVATD SRFQTLSANS GSEIDDSVSV NGISSYSSGG GNGLVLTGGC  180
GRTLMAPCQS LEKVVVSGAV TAKAKKASTD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC  240
RREGQSRKGR QVYLGNFCLS KIVYTCSLVD SFQVQIVVQC RSFIDEICFL LGGYDKEEKA  300
ARAYDLAALK YWGSTATTNF PVSDYSKEIE EMKRMTRQEF VASLRRKSTG FSRGASIYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFGT EVEAAEAYDV AAIKFRGINA VTNFEINRYD  420
VDAIANSTLP IGAAAKRMKF SLPAEQEPKH IQPGIDIVSP LNLCSQENSA TALLQNLLCL  480
HPTASVGSPV GPELDLCRLL Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.3	1e-114	AP2 family protein