PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77187.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 552aa MW: 60204.4 Da PI: 8.0726

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.7	1.2e-41	162	238	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+yh+rhkvCe+hsk++ v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q RWR77187.1 162 CCQVHGCNVDLSSSKDYHKRHKVCEIHSKTARVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 238 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MDSWSYGSVG TGLVLSDEMV SSSTDDALAK NRKVFANWDF KTPSSYESEM LVSGREAVGI 60 QGLGFSNGRV VSSSSSCGLI NPKMFLGEEE SGVSGTSSSV GEYSARDSSL IDLKLGRLAD 120 YRDTMSGKSL KEVKVSSSSI VSPMPPIKRS RLGNSNGQTT PCCQVHGCNV DLSSSKDYHK 180 RHKVCEIHSK TARVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPQLD 240 NHAGRTGKML SSCHGSSYLG ASLAAGASFV CSDMFPNGIV HGVKFENSNW FRNVKVEDDA 300 NPRPLVSVMN SHSFPKPIHT PFGMEKQLPS LRGIDTASVS MCYRNGNRYV QDFTGSQSIF 360 QNASSGAEEF ASFNTSSTME GVPGVSDSGC ALSLLSIQSQ NSSTPLSAIP MARPLTVQGR 420 QTHYRVEFPD KLLVVSSQPA TSVASNRFSS PGMEDDHMGA VLVSDDSNVV TFEAQEESDF 480 HTSRFLNTKD SVLCREHDHT IDLLPLSSQL QSVELQRHSA QVGKQCGKGE SKCFVWSLKQ 540 ARSSWSFKIV QS

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MDSWSYGSVG TGLVLSDEMV SSSTDDALAK NRKVFANWDF KTPSSYESEM LVSGREAVGI  60
QGLGFSNGRV VSSSSSCGLI NPKMFLGEEE SGVSGTSSSV GEYSARDSSL IDLKLGRLAD  120
YRDTMSGKSL KEVKVSSSSI VSPMPPIKRS RLGNSNGQTT PCCQVHGCNV DLSSSKDYHK  180
RHKVCEIHSK TARVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPQLD  240
NHAGRTGKML SSCHGSSYLG ASLAAGASFV CSDMFPNGIV HGVKFENSNW FRNVKVEDDA  300
NPRPLVSVMN SHSFPKPIHT PFGMEKQLPS LRGIDTASVS MCYRNGNRYV QDFTGSQSIF  360
QNASSGAEEF ASFNTSSTME GVPGVSDSGC ALSLLSIQSQ NSSTPLSAIP MARPLTVQGR  420
QTHYRVEFPD KLLVVSSQPA TSVASNRFSS PGMEDDHMGA VLVSDDSNVV TFEAQEESDF  480
HTSRFLNTKD SVLCREHDHT IDLLPLSSQL QSVELQRHSA QVGKQCGKGE SKCFVWSLKQ  540
ARSSWSFKIV QS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	6e-44	SBP family protein