PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77035.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 356aa MW: 39218.6 Da PI: 5.0727

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	7e-06	16	56	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r C+ + + + +C+ ++ +lC+ C +H H+ RWR77035.1 16 RSCDSCRSAACTVYCRADSAYLCAGCDGRIHAAnpvasrHE 56 68****99***************99995556666666 PP
2	zf-B_box	25.4	3e-08	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC+ C +H+ H +vp+ RWR77035.1 58 VWVCEACEHAPASVTCKADAASLCAVCDADIHSAnplarrHHRVPI 103 689*****************************66899999877775 PP
3	CCT	70.5	4.3e-24	294	337	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ RWR77035.1 294 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 337 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MMKEERNSGH GGGLARSCDS CRSAACTVYC RADSAYLCAG CDGRIHAANP VASRHERVWV 60 CEACEHAPAS VTCKADAASL CAVCDADIHS ANPLARRHHR VPILPISGHL FGPPAAAHLG 120 IRPDGFEEAG EVQEQEEEDD EAASWLLLNS VKTNNQSNGF LYGGEVEEYL DLVEYNSCGE 180 NQFQDEYNQQ ENHGMGDGSD SVVPVQCGGG IEQLQEQQKL QQNPQMEIEY EASNTGFSYT 240 ASISQSVSSI EAGIVPDATM IDISNSHIRP PKGTIELFSG PSLQMPHQFI PMDREARVLR 300 YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFAKRTDVE VEVDQMFNAA VMAENG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MMKEERNSGH GGGLARSCDS CRSAACTVYC RADSAYLCAG CDGRIHAANP VASRHERVWV  60
CEACEHAPAS VTCKADAASL CAVCDADIHS ANPLARRHHR VPILPISGHL FGPPAAAHLG  120
IRPDGFEEAG EVQEQEEEDD EAASWLLLNS VKTNNQSNGF LYGGEVEEYL DLVEYNSCGE  180
NQFQDEYNQQ ENHGMGDGSD SVVPVQCGGG IEQLQEQQKL QQNPQMEIEY EASNTGFSYT  240
ASISQSVSSI EAGIVPDATM IDISNSHIRP PKGTIELFSG PSLQMPHQFI PMDREARVLR  300
YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFAKRTDVE VEVDQMFNAA VMAENG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-104	CO-like family protein