PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76889.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LFY
Protein Properties Length: 393aa    MW: 44049.8 Da    PI: 7.8746
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY617.42.6e-18813841385
     FLO_LFY   1 mdpeafsaslfkwdpraaa.aapparlleeaavseap..........leaaaaaaark.lr......eleelfkayGvryltvakiaelGftvstLvdm 81 
                 mdp+afsa l kwdpr+ + ++pp+rll+++ + ++p                   ++ +r      ++e++f+ayGvry+tva++aelGftvstL+dm
  RWR76889.1   1 MDPDAFSACLIKWDPRTSSaVPPPSRLLNSTIAIPHPpppphatiplP-------GTSlCRpattlcGMEDFFQAYGVRYYTVARMAELGFTVSTLLDM 92 
                 9*************9987746677898888877765545543332222.......333244566666******************************** PP

     FLO_LFY  82 kdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaek.krrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeek 179
                 kdee+dd+m+sls+ifr+dllvGeryGikaavraerrrl+ee+a++ +rr l+s+ ++ta dalsqeglseepvq+ekeaagsg +g++e         
  RWR76889.1  93 KDEEIDDMMTSLSQIFRWDLLVGERYGIKAAVRAERRRLDEESAASaRRRYLFSSADATAFDALSQEGLSEEPVQQEKEAAGSGSGGAAE--------- 182
                 ****************************************9877651555566888889************************9988211......... PP

     FLO_LFY 180 kseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcP 278
                     +kk++ +++++    + ++++   +ee +e ++++  + +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq++akerGekcP
  RWR76889.1 183 ----KKKQQLQRRRRACGVTGTSTSGGGEEEMDEYDEDNAVRLGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNLAKERGEKCP 277
                 ....122222222333333333333344444455555667788899***************************************************** PP

     FLO_LFY 279 tkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqL 377
                 tkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasn+lrrafkergenvGawrqacykplv++aarqgwdida+fnahprL+iWYvPtkLrqL
  RWR76889.1 278 TKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNSLRRAFKERGENVGAWRQACYKPLVTMAARQGWDIDAIFNAHPRLAIWYVPTKLRQL 376
                 *************************************************************************************************** PP

     FLO_LFY 378 Chlerska 385
                 Ch+er+++
  RWR76889.1 377 CHAERNSS 384
                 *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MDPDAFSACL IKWDPRTSSA VPPPSRLLNS TIAIPHPPPP PHATIPLPGT SLCRPATTLC  60
GMEDFFQAYG VRYYTVARMA ELGFTVSTLL DMKDEEIDDM MTSLSQIFRW DLLVGERYGI  120
KAAVRAERRR LDEESAASAR RRYLFSSADA TAFDALSQEG LSEEPVQQEK EAAGSGSGGA  180
AEKKKQQLQR RRRACGVTGT STSGGGEEEM DEYDEDNAVR LGGCERQREH PFIVTEPGEV  240
ARGKKNGLDY LFHLYEQCRE FLIQVQNLAK ERGEKCPTKV TNQVFRYAKK AGASYINKPK  300
MRHYVHCYAL HCLDEEASNS LRRAFKERGE NVGAWRQACY KPLVTMAARQ GWDIDAIFNA  360
HPRLAIWYVP TKLRQLCHAE RNSSAIATSQ PSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183193KKKQQLQRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-110LFY family protein