PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76736.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 567aa MW: 62138.7 Da PI: 8.7628

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	65	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l davk++ g++Wk+Ia+ ++ R++ qc +rwqk+l RWR76736.1 65 KGGWTQEEDEKLGDAVKLFKGKCWKKIAESFP-DRSEVQCLHRWQKVL 111 688***************************.**********986 PP
2	Myb_DNA-binding	62	1.2e-19	117	163	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v ++G + W+ Ia+ ++ gR +kqc++rw+++l RWR76736.1 117 KGPWTQEEDDKIVELVSKYGARKWADIAKSVP-GRIGKQCRERWHNHL 163 79****************************.***********97 PP
3	Myb_DNA-binding	54.7	2.3e-17	169	212	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++ RWR76736.1 169 KDAWTLEEEFALMKAHQIHGNK-WAEIAKILP-GRTDNSIKNHWNS 212 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MEKKKKKVKN EESCDLNKQS AGVTSSSSIS DGSCSFGFKS PGVCSGAETT SPSYRRTTGP 60 IRRAKGGWTQ EEDEKLGDAV KLFKGKCWKK IAESFPDRSE VQCLHRWQKV LNPELVKGPW 120 TQEEDDKIVE LVSKYGARKW ADIAKSVPGR IGKQCRERWH NHLNPTIKKD AWTLEEEFAL 180 MKAHQIHGNK WAEIAKILPG RTDNSIKNHW NSSLKKKLDF YLATGTLPPT PKTPMQSDTK 240 STVKATGKLS ICTNKSLDKI DQTLSGTSDA IHAGLTTPHC QPDEDRNNQL EPSTTKHSHT 300 DTSTNVPVNG LNNFDSKKWA AKFDNCSNNK HGEIDQTYIT GTPKIGSLCY EPVSGNCEAS 360 MDATFSTMFP NMQHVCHSTS LSQSPFGCFT PLAKSVGSSP ETAESILRNA AKSFPNTPSI 420 LRKRKWVSHC TPLKNEVTDG TKVQGSSYTP KEEQTGSNDQ GQLGCENATP CESPAGSGND 480 GVEAFHGKVF SVSPPYRLKS KRTAILKSVE KQLDFTLDDE EPLDGSTKSL SFGAVKDCGM 540 DSDASLSRIH GKRLSSKCSH TTKAGVT

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MEKKKKKVKN EESCDLNKQS AGVTSSSSIS DGSCSFGFKS PGVCSGAETT SPSYRRTTGP  60
IRRAKGGWTQ EEDEKLGDAV KLFKGKCWKK IAESFPDRSE VQCLHRWQKV LNPELVKGPW  120
TQEEDDKIVE LVSKYGARKW ADIAKSVPGR IGKQCRERWH NHLNPTIKKD AWTLEEEFAL  180
MKAHQIHGNK WAEIAKILPG RTDNSIKNHW NSSLKKKLDF YLATGTLPPT PKTPMQSDTK  240
STVKATGKLS ICTNKSLDKI DQTLSGTSDA IHAGLTTPHC QPDEDRNNQL EPSTTKHSHT  300
DTSTNVPVNG LNNFDSKKWA AKFDNCSNNK HGEIDQTYIT GTPKIGSLCY EPVSGNCEAS  360
MDATFSTMFP NMQHVCHSTS LSQSPFGCFT PLAKSVGSSP ETAESILRNA AKSFPNTPSI  420
LRKRKWVSHC TPLKNEVTDG TKVQGSSYTP KEEQTGSNDQ GQLGCENATP CESPAGSGND  480
GVEAFHGKVF SVSPPYRLKS KRTAILKSVE KQLDFTLDDE EPLDGSTKSL SFGAVKDCGM  540
DSDASLSRIH GKRLSSKCSH TTKAGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-124	MYB family protein