PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR76554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 462aa MW: 49596.5 Da PI: 7.7844 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 38 | 64 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ff rtG C +G+rC+++H++ RWR76554.1 38 PGEPDCKFFVRTGSCGFGARCRYNHPR 64 5789*********************96 PP | |||||||
2 | zf-CCCH | 37.3 | 4.7e-12 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG+Ck+G +CkF+H++ RWR76554.1 86 EPTCEYFMKTGYCKFGTTCKFHHPK 110 689********************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.5e-11 | 131 | 156 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H+p RWR76554.1 131 GEKECSYYLKTGHCKFGITCKFHHPP 156 7899********************97 PP | |||||||
4 | zf-CCCH | 37.4 | 4.3e-12 | 281 | 306 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Crf++rtG+CkyG+ C+++H+p RWR76554.1 281 GQPECRFYLRTGYCKYGSLCRYHHPP 306 5799********************97 PP | |||||||
5 | zf-CCCH | 32 | 2.1e-10 | 328 | 352 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+a+ G Ck+G +CkF H++ RWR76554.1 328 APVCPFYAQHGGCKFGLTCKFDHPM 352 589********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence |
MIHPSMEGPT SDPDTDTGLE DSMWQLESGG GDPYPERPGE PDCKFFVRTG SCGFGARCRY 60 NHPRDRRAVA GGSRIENGEY PERVGEPTCE YFMKTGYCKF GTTCKFHHPK YGGGSASTVS 120 LNYDGYPLRP GEKECSYYLK TGHCKFGITC KFHHPPPSSI SMPAPPPTFY PTVQPHSVPS 180 PISSWEVARP LLPGSYVQGP YGPMLISSGV VQIPGWSPYP QPPINPVASP GTQHAVETGS 240 LYGLMHQLSP LAPAYPGPYS SSSPGPSRSN QKEHIFPERT GQPECRFYLR TGYCKYGSLC 300 RYHHPPERSM PITNCSLSLM GLPLRPGAPV CPFYAQHGGC KFGLTCKFDH PMGTLSYSPS 360 ASSLPDMPVV PYPVGSFMGS TDPSSSSSEL RPEFVAESSR ESFSTRIPLS KNTSSGSVGS 420 IFTKGGAPGP QAHAQAQSSG PSSTPSDGGS STGHVSENRS LS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-148 | C3H family protein |