PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR75795.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 386aa MW: 43750.8 Da PI: 8.544

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR75795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	122	167	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ RWR75795.1 122 RGHWRPAEDAKLKELVSLYGPQNWNLIAQKLE-GRSGKSCRLRWFNQ 167 899***************************.*********996 PP
2	Myb_DNA-binding	58.1	2e-18	174	218	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ + RWR75795.1 174 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHVL 218 678*****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MNMQQLHPNL YQRASDVEGF KKYTGINFSP SSNPTFGDLI STRDSNCKSS EMGFQVLSPS 60 LEQQQNKAWS SQCFNESRIQ RADGGGEGPY GNEKNGLSLK EERENSEAEK EHENGQFKLC 120 SRGHWRPAED AKLKELVSLY GPQNWNLIAQ KLEGRSGKSC RLRWFNQLDP RINRRAFSEE 180 EEERLLAAHR LYGNKWALIA RLFPGRTDNA VKNHWHVLMA RKNREQPSNY RRRKVSSPIL 240 HKRMEMNCNN ACSESTITST RDESASTCTD LSLNSSSRIL RMGLSRLSPT QQQQPYDFVL 300 GTDEKMAPPL RSPCYDKLDD SSNSVYHADP TVAGISVDQS NLLYSNFKIS ASESLANRSR 360 LNVYGVTDHG REINLPFIDF LGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MNMQQLHPNL YQRASDVEGF KKYTGINFSP SSNPTFGDLI STRDSNCKSS EMGFQVLSPS  60
LEQQQNKAWS SQCFNESRIQ RADGGGEGPY GNEKNGLSLK EERENSEAEK EHENGQFKLC  120
SRGHWRPAED AKLKELVSLY GPQNWNLIAQ KLEGRSGKSC RLRWFNQLDP RINRRAFSEE  180
EEERLLAAHR LYGNKWALIA RLFPGRTDNA VKNHWHVLMA RKNREQPSNY RRRKVSSPIL  240
HKRMEMNCNN ACSESTITST RDESASTCTD LSLNSSSRIL RMGLSRLSPT QQQQPYDFVL  300
GTDEKMAPPL RSPCYDKLDD SSNSVYHADP TVAGISVDQS NLLYSNFKIS ASESLANRSR  360
LNVYGVTDHG REINLPFIDF LGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-68	MYB family protein