PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR75406.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 739aa    MW: 82488.7 Da    PI: 6.6239
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR75406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1746101156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++++ q+ e+e++F+++++p++++r+eL ++lgL++ q+k+WFqN+R+++k
  RWR75406.1  46 KKPYHRHSQRQIFEMESFFKECPHPNEKQRRELGQRLGLSQLQIKFWFQNKRTQMK 101
                 689999***********************************************998 PP
2START183.98.6e-582754932205
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 la  a++el+++a +++p+W+  +    e++  de++++f+++ +      s+e  r+++vv m++ +lve+l+d++ qW +++     kaetlev++ 
  RWR75406.1 275 LAVVAMDELIRLAMLGQPVWTPGYdgstEILSLDEYVKIFPRGISpkrfgLSSEGTRETAVVAMNHINLVEILMDVN-QWAHMFStivsKAETLEVLTA 372
                 66779*****************9999999999**********999********************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+++ae+q+++plvp R+++f+Ry++++g+g+w++vd+S+ds ++      + R+++ pSg++i++++nghskvtw+eh++ +++ +h+
  RWR75406.1 373 GvggkynGALQVITAEFQVPTPLVPaRESYFARYCKRHGDGTWAVVDNSLDSLRPGG----LDRCQRKPSGCVIQEMPNGHSKVTWIEHMEIDDKEIHQ 467
                 *******************************************************85....7************************************* PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqce 205
                 ++r++v+ gl +gak+w+ tl+rqc+
  RWR75406.1 468 MYRPIVSFGLLFGAKRWLTTLDRQCQ 493
                 *************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    
MNNTTPQSQM QKAAKGKELK SKPRNKNQAR ASSSRNDHDQ NQPARKKPYH RHSQRQIFEM  60
ESFFKECPHP NEKQRRELGQ RLGLSQLQIK FWFQNKRTQM KVKDFNEDAD KVSSIHEFES  120
LCGCVVLFGS CDRQFWLIYN YHERHESAHL KTEIEYLHME INRYKEALSS AMCLTCNGPL  180
TINEISYNEQ QLKLENAHLR EENNRISEIA SKYVGKRMLP QYSVAPPGPS HSSLDPPTGS  240
FGMHVSMGAE MYEAAAILQS MPGQPDTEKL TIVELAVVAM DELIRLAMLG QPVWTPGYDG  300
STEILSLDEY VKIFPRGISP KRFGLSSEGT RETAVVAMNH INLVEILMDV NQWAHMFSTI  360
VSKAETLEVL TAGVGGKYNG ALQVITAEFQ VPTPLVPARE SYFARYCKRH GDGTWAVVDN  420
SLDSLRPGGL DRCQRKPSGC VIQEMPNGHS KVTWIEHMEI DDKEIHQMYR PIVSFGLLFG  480
AKRWLTTLDR QCQHRAIAMD GGNPGGDGAI TSQEGRNNIL KLGERMVNSF CAGVCASTTH  540
SWTPVSGNGF DDVRVMMKRI SDDPGRPSGI VLSASTSFWL PHPNKRVFDY LRSENSRNEW  600
DILASEGTIE EVATIENGRE PGNYISVLRV KCLDSNYTNM LLLQECCTDP TGSSVIYAPT  660
DIASMNMILS GGDPDYVALL PSGFSLFPDG AGGSVLTVTI QILVDSASTD NLFIASITTI  720
DNLISCTIEK MKVLIRGNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein