PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR75405.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 734aa    MW: 81983 Da    PI: 7.0009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR75405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1981134457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +++t++q+++Le+lF++++ p+ ++r+eLA++l+L+  qVk+WFqN+R+++k+
  RWR75405.1  81 NHRHTQSQINALEALFKECPRPDDKQRRELAQQLSLEPLQVKFWFQNKRTQMKN 134
                 5789***********************************************995 PP
2START169.52.2e-532734896206
                 HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
       START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
                 a++elv++a++++p+W+       e+  ++e++++f++ ++       +e+ r+++v+ m++ +lve+l++++ qW   +     ka +++v+ +    
  RWR75405.1 273 AMDELVRMATLGQPLWTPADdgstEIICYEEYVRTFTRRNSpkhfgMISEVTRETAVLAMNHINLVEILMNVN-QWASVFStiisKAVIMDVLVPSdga 370
                 89***************999777777789999999999888**9999**************************.*******99997777777766567* PP

                 ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
       START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    galq+m+ae+q++splvp R+++f+R+++q+g+g+wv+vdvS+ds  + p    + R++++pSg++i++++nghskvtwvehv+++ + +h ++++
  RWR75405.1 371 nynGALQVMSAEFQVPSPLVPvRESYFARFCKQHGDGKWVVVDVSLDSVYPGP----LERSRRRPSGCVIQEVPNGHSKVTWVEHVEVDHKKVHPMYKP 465
                 ****************************************************9....59999************************************* PP

                 HHHHHH.HHHHHHHHHHTXXXXXX CS
       START 184 lvksgl.aegaktwvatlqrqcek 206
                 + + g+  +gak+w atl+rqce+
  RWR75405.1 466 IAGLGRlLFGAKRWIATLDRQCER 489
                 ***9852789************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MNNDVLEGEE QQNAQNVPWQ MNNDVLEGEE QQNAQNVPWQ MNNTTLEREI PSSKHGSNNN  60
RGSSSSSNGR NQSLSGRKNP NHRHTQSQIN ALEALFKECP RPDDKQRREL AQQLSLEPLQ  120
VKFWFQNKRT QMKNHHDRHE STNLRTENEL LRMENMRYKE ALSSMMCHTC SGPITIGETS  180
YNEEQLRLEN TRLREEENQR ISVASKNVGK RMLPQCSRAP RVPSHASLEP PTRSIGTQVG  240
MSAEMYEAAE ILQSMPSQPD PDKQMIVEIV VVAMDELVRM ATLGQPLWTP ADDGSTEIIC  300
YEEYVRTFTR RNSPKHFGMI SEVTRETAVL AMNHINLVEI LMNVNQWASV FSTIISKAVI  360
MDVLVPSDGA NYNGALQVMS AEFQVPSPLV PVRESYFARF CKQHGDGKWV VVDVSLDSVY  420
PGPLERSRRR PSGCVIQEVP NGHSKVTWVE HVEVDHKKVH PMYKPIAGLG RLLFGAKRWI  480
ATLDRQCERL AIVMASGNLG GDGVITSQEG RKSMLKLAER MVTSSFTGVR ASTAHSWTSV  540
SGNCSKDVRI MMKRSSDDPG RPSGVILSAS TSLWLPLPHK RVFDYLRSEN SRNKWDIHAC  600
EGPIEEMTNF ENGREPGNSV SLLRINSSDP NKTNMLMLQE CRTDPTGSFL IYAPVGITSV  660
NMVLNGGDPD NVAILPSGFS LFPDDAGRCL LTVAYQILVD SVPTATLPLA SVMTVNRLTS  720
ATVEKMKALI TANA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein