PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR75149.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34781.1 Da PI: 6.527

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR75149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	4.9e-18	164	218	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ +++ LAk+l+L rqV vWFqNrRa+ k RWR75149.1 164 RKKLRLSKDQSAFLEESFKENNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 218 778899***********************************************98 PP
2	HD-ZIP_I/II	126.9	8.6e-41	164	254	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eL+ +lk RWR75149.1 164 RKKLRLSKDQSAFLEESFKENNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELK-ALK 254 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MELGLRLGEA PKPFSFMDAN TEMSKGFGPC LGLGVGLYTK GEERASVDSP VQLDLLPLVP 60 VPRYPPPHLM FSLPTENRVS ESGVSGNLTT NRGFDVNHLP STEDIDDGAA ASSPNSAVSS 120 YQMEFSIYTR GGSKRNAEDA ALNEVETERA SSRASDDEEN GLARKKLRLS KDQSAFLEES 180 FKENNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN 240 RRLHKELQEL KALKTTNPFH MQLPATTLTM CPSCERVATT TTTTNNETTQ KTATLQATNR 300 PWFFPFSQPT D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	221	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-66	HD-ZIP family protein