PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR75127.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 740aa    MW: 81336.7 Da    PI: 6.8214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR75127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2057112156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++eLe++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  RWR75127.1  57 KKRYHRHTARQIQELEAMFKECPHPDEKQRLQLSRDLGLEPRQIKFWFQNRRTQMK 112
                 688899***********************************************998 PP
2START182.81.9e-572524761206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 e+a  a++el+++ +a+ep+W ks+    e++n d + ++f++ +       ++ea r+sg+v+m++  lve ++d++ +W e ++    ka t+ev+ 
  RWR75127.1 252 EIAANAMDELIRLLQADEPLWIKSAvdgrEILNLDNYERIFPRPNHlkspdIRIEATRDSGHVIMNALALVEMFMDSN-KWMELFPtiisKARTIEVLA 349
                 57889************************************99888999999**************************.******9999********** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 +g      g lqlm+ elq+lsplvp R+f+f+Ry++q ++g w+i+dvS+d  + ++      R+++lpSg+li++++ng+sk+tw+ehv+ ++++p 
  RWR75127.1 350 PGmagnrsGSLQLMYEELQVLSPLVPtREFYFLRYCQQIEQGMWAIADVSIDYSRVNQ-FVTPSRSRRLPSGCLIHDMPNGYSKITWMEHVEIEEKSPt 447
                 ****************************************************999998.45567889******************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h  +r l++ g+a+ga++wv tlqr ce+
  RWR75127.1 448 HRTYRELINGGMAFGAQRWVTTLQRICER 476
                 ***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MYSNGLVGLE RAGLYRSFAG EEIVRNGLSV GNGMEGGSSS GGGAGDDPDA SDPHRKKKRY  60
HRHTARQIQE LEAMFKECPH PDEKQRLQLS RDLGLEPRQI KFWFQNRRTQ MKAQHERSDN  120
CSLRSENDKI RCENIAIREA LKNVICPSCG VPPVGEDAYF DEQKLRMENA RLKEELDRVS  180
SIAAKYIGRP ISQLPPIHPI PVSSLDLTVG SFGGQGFGPS LDLDLLPGSS SIAPLPMQTV  240
GIAEMEKPLM VEIAANAMDE LIRLLQADEP LWIKSAVDGR EILNLDNYER IFPRPNHLKS  300
PDIRIEATRD SGHVIMNALA LVEMFMDSNK WMELFPTIIS KARTIEVLAP GMAGNRSGSL  360
QLMYEELQVL SPLVPTREFY FLRYCQQIEQ GMWAIADVSI DYSRVNQFVT PSRSRRLPSG  420
CLIHDMPNGY SKITWMEHVE IEEKSPTHRT YRELINGGMA FGAQRWVTTL QRICERLACL  480
MVTGASTRDL GGVIPSPDGR RSMMKLAQRM INNFCSSISA SNGHRWTTLS GLNDVGVRVT  540
VHKPTDPGQP NGVVLSAATS LWLPVSPQTV FNFFKDERTR PQWDVLSNGN SVQEVAHIAN  600
GSHPGNCISV LRALNSSQNN MLILQESCTD LSGSLVVYAP VDLPAINIAM SGEDPSYIPL  660
LPSGFTISPD GRPDNSGAGA SSSSNLQGGV ARSAGSLITV AFQILVSSLP SAKLNHESVA  720
TINNLISATV QQIKAALNCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein