PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR75088.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 380aa MW: 42768 Da PI: 4.7816

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR75088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.6	4.6e-34	16	108	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k y++++d+ ++ ++sws g++fvv+d+ f++++LpkyFkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F+kg+k+ll++i RWR75088.1 16 FLSKCYDMVNDALTEATVSWSPAGDTFVVWDPPAFSRDLLPKYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFRKGQKNLLKSIA 103 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ RWR75088.1 104 RRKQT 108 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MTTQGPDPSG NTPAPFLSKC YDMVNDALTE ATVSWSPAGD TFVVWDPPAF SRDLLPKYFK 60 HGNFSSFVRQ LNTYGFRKVD PDRWEFANEG FRKGQKNLLK SIARRKQTQS LTQQRQLSHE 120 STTPVVACVE VGKFGLEEEI ERLKRDKNVL AQELVKLRQH QQSTDLLVRD LRRRVQGMEQ 180 HQQQMLSFFV MAMQRPGFFA QLLQQNDRLL SDVSKKRRLP ALEQGSEDVH ASAGGQIVKY 240 EPLKNENSKP LIMPVSDSNL SPAPVPSFDG ASDLFENIDW ASLGIDMSLP MEVDVHSSEA 300 DGTFVFLEIS NDELEQLLMT TSYSENGGEK GPGILEPVDY GLQFEASEKK TPSETPQNLD 360 LLTEQMGHLT SELNRDNEPA

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MTTQGPDPSG NTPAPFLSKC YDMVNDALTE ATVSWSPAGD TFVVWDPPAF SRDLLPKYFK  60
HGNFSSFVRQ LNTYGFRKVD PDRWEFANEG FRKGQKNLLK SIARRKQTQS LTQQRQLSHE  120
STTPVVACVE VGKFGLEEEI ERLKRDKNVL AQELVKLRQH QQSTDLLVRD LRRRVQGMEQ  180
HQQQMLSFFV MAMQRPGFFA QLLQQNDRLL SDVSKKRRLP ALEQGSEDVH ASAGGQIVKY  240
EPLKNENSKP LIMPVSDSNL SPAPVPSFDG ASDLFENIDW ASLGIDMSLP MEVDVHSSEA  300
DGTFVFLEIS NDELEQLLMT TSYSENGGEK GPGILEPVDY GLQFEASEKK TPSETPQNLD  360
LLTEQMGHLT SELNRDNEPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	2e-88	HSF family protein