PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74959.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 389aa MW: 43101.7 Da PI: 5.3829

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.3e-07	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C + H+ H++ RWR74959.1 16 ARPCDSCLCKRARWYCAADDAFLCQACDASVHSAnqlarrHERL 59 678*****************************657777778766 PP
2	CCT	67	5.3e-23	329	372	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk+a RWR74959.1 329 REARVSRYREKRRSRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 372 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MSSEKRSANA LGGKTARPCD SCLCKRARWY CAADDAFLCQ ACDASVHSAN QLARRHERLS 60 LKTSAGSPLR TEPLPPWLHG FRRKARTPRH SKPKSSAAAG AEQPQIPLLV PDLSSGDDSS 120 PPDEEQLLYR VPIFDPVADS ALPAANPLAA SNRGESKPSI PASVHDACLD FDTCDADLAA 180 DMESLLGKDL DSDSFCMDAL GLMDAGEGEM EMEWKVKMEE VDDMALDTTR HVECELDLSS 240 DTLDLKFGYE SPTTAMNCED EEVVEKKKIC LRLNYESVIT AWDTQGSPWM NGDRPNFNPD 300 DCWPDWMGLE PQQLYQMGGV GGQMMDRGRE ARVSRYREKR RSRLFSKKIR YEVRKLNAEK 360 RPRMKGRFVK RASLVGPPAA AVGATGFGF

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MSSEKRSANA LGGKTARPCD SCLCKRARWY CAADDAFLCQ ACDASVHSAN QLARRHERLS  60
LKTSAGSPLR TEPLPPWLHG FRRKARTPRH SKPKSSAAAG AEQPQIPLLV PDLSSGDDSS  120
PPDEEQLLYR VPIFDPVADS ALPAANPLAA SNRGESKPSI PASVHDACLD FDTCDADLAA  180
DMESLLGKDL DSDSFCMDAL GLMDAGEGEM EMEWKVKMEE VDDMALDTTR HVECELDLSS  240
DTLDLKFGYE SPTTAMNCED EEVVEKKKIC LRLNYESVIT AWDTQGSPWM NGDRPNFNPD  300
DCWPDWMGLE PQQLYQMGGV GGQMMDRGRE ARVSRYREKR RSRLFSKKIR YEVRKLNAEK  360
RPRMKGRFVK RASLVGPPAA AVGATGFGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	356	RRSRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-67	CO-like family protein