PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74890.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 473aa MW: 52954.6 Da PI: 5.6659

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.9	4.4e-12	141	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++ + g ++ +e Aa ++ a++k++g RWR74890.1 141 SVYRGVTRHRWTGRYEAHLWDkSSWNSvqnKKgRQENAGAYDEEEAAAHTYDLAALKYWG 200 78*****************777788866447***********************98 PP
2	AP2	51.4	2.8e-16	243	294	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g RWR74890.1 243 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDMAAIEYRG 294 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MVKHPAQDPN PWPTSQPTSP THAPMYKYPH IFPFLSPQCP SLYALLNNLG IKTETEEEGE 60 KLEPLIRPHY RHYSKTHHLL PQMDTSSPLS NSISSSSSST TSSSSSSSPL SQPTKTKIKR 120 TRRNLNPEKS QFGANPGRRS SVYRGVTRHR WTGRYEAHLW DKSSWNSVQN KKGRQENAGA 180 YDEEEAAAHT YDLAALKYWG PDTILNFPLN TYAKEYDEMQ MVSKEEYLAS LRRRSSGFSR 240 GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AAAAYDMAAI EYRGLNAVTN 300 FDISHYIRCQ PPPPQPPQPS PFQAEPHHVA PPQIQLPENS DPIDQTAIMN PLTDQPWNLC 360 MDPTFNPIPV PDIALDKSNE LHDLFNDTGF EDNIEFLFDG AEGGFPTGPT TTGIHEGVGN 420 EMKLDDGIFE NSGGFEGDFL NDIEDGGDCG LMDENMNASV DSISYPLPIS ICS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MVKHPAQDPN PWPTSQPTSP THAPMYKYPH IFPFLSPQCP SLYALLNNLG IKTETEEEGE  60
KLEPLIRPHY RHYSKTHHLL PQMDTSSPLS NSISSSSSST TSSSSSSSPL SQPTKTKIKR  120
TRRNLNPEKS QFGANPGRRS SVYRGVTRHR WTGRYEAHLW DKSSWNSVQN KKGRQENAGA  180
YDEEEAAAHT YDLAALKYWG PDTILNFPLN TYAKEYDEMQ MVSKEEYLAS LRRRSSGFSR  240
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AAAAYDMAAI EYRGLNAVTN  300
FDISHYIRCQ PPPPQPPQPS PFQAEPHHVA PPQIQLPENS DPIDQTAIMN PLTDQPWNLC  360
MDPTFNPIPV PDIALDKSNE LHDLFNDTGF EDNIEFLFDG AEGGFPTGPT TTGIHEGVGN  420
EMKLDDGIFE NSGGFEGDFL NDIEDGGDCG LMDENMNASV DSISYPLPIS ICS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-87	AP2 family protein