PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74504.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 379aa MW: 41373.3 Da PI: 8.2171

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.1e-41	91	167	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCevh+k+p+v+v g++qrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ RWR74504.1 91 CLVDGCKSDLSNCREYHRRHKVCEVHAKTPTVMVGGQQQRFCQQCSRFHLLMEFDEVKRSCRKRLDGHNRRRRKPQQ 167 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDWDIKTTPW ELAELGQDAE PNISSVVGLS NLGEQRNQAN CSVDLKLGGL GDFSDPSSNK 60 WKNSRVPMMG SPSGTSKRAR MPSNGSQMAS CLVDGCKSDL SNCREYHRRH KVCEVHAKTP 120 TVMVGGQQQR FCQQCSRFHL LMEFDEVKRS CRKRLDGHNR RRRKPQQDFL SVNSGNLYPS 180 HQGLIIFSST GTSFSRYVPP QILVSATSDP DWTSVVKAED DTHYIQHPSL HIRSGQYPST 240 ASFSIDYKGG KQLHFLQGSD SSSAFSNRKI IETPGHTPLN AIAASESSGS KVFAEGLPRV 300 FNSDCALSLL SAPTQASSSS LSRMVVPANQ IPMAQPLVTS MQYSSMGQYS CSQVSNSVSS 360 TGFSCSEIDN DQVGTVLGL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDWDIKTTPW ELAELGQDAE PNISSVVGLS NLGEQRNQAN CSVDLKLGGL GDFSDPSSNK  60
WKNSRVPMMG SPSGTSKRAR MPSNGSQMAS CLVDGCKSDL SNCREYHRRH KVCEVHAKTP  120
TVMVGGQQQR FCQQCSRFHL LMEFDEVKRS CRKRLDGHNR RRRKPQQDFL SVNSGNLYPS  180
HQGLIIFSST GTSFSRYVPP QILVSATSDP DWTSVVKAED DTHYIQHPSL HIRSGQYPST  240
ASFSIDYKGG KQLHFLQGSD SSSAFSNRKI IETPGHTPLN AIAASESSGS KVFAEGLPRV  300
FNSDCALSLL SAPTQASSSS LSRMVVPANQ IPMAQPLVTS MQYSSMGQYS CSQVSNSVSS  360
TGFSCSEIDN DQVGTVLGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	165	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-43	SBP family protein