PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74503.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27141.9 Da PI: 9.3093

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s RWR74503.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCS 59 79***********************************************96 PP
2	K-box	97.6	1.9e-32	81	173	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++ +s++qe+ kLk+++e Lqr+qR+llGedL++L+ keL Le+qL+ slk+iRs++++++l+q+ +lq++e++l+e+nk+Lr++lee RWR74503.1 81 TVSSRELQSSHQEYMKLKARVEALQRSQRNLLGEDLGPLTGKELDTLEKQLDVSLKHIRSTRTQYMLDQLGDLQRREQMLSEANKSLRRRLEE 173 478999***********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST RGKLYEFCST 60 ASMLKTLERY QKCNYGAPET TVSSRELQSS HQEYMKLKAR VEALQRSQRN LLGEDLGPLT 120 GKELDTLEKQ LDVSLKHIRS TRTQYMLDQL GDLQRREQML SEANKSLRRR LEEGMQENPN 180 QAWDPNGYGR QQAPPQSDGF FHPIDCEPTL QMGYQSNQIT IAAPGPNVNN YMPGWLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-116	MIKC_MADS family protein