PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR74268.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 511aa    MW: 56858.1 Da    PI: 5.1401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR74268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.96.8e-891455093374
        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 e+L+++Ae+v+s+dl laq +Larl+++   p g+p+qR+a+yf+eAL++ l++++++ + ++++s+ +   +++++ a+k+fs++sPi++f+++taNq
  RWR74268.1 145 EQLIQAAECVDSNDLPLAQVILARLNQQlLYPVGKPLQRAAFYFKEALESLLLGQQQHRS-KIASSHFE---TVQKIVAYKAFSDLSPIFQFANFTANQ 239
                 79************************9989************************655555.45666665...799************************ PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 aIleav+   + vH+iDfdi+ G+QWp+++q++a +       +++ lRiT++ +   +++ e++  g+ L +fA+elg++f+++++    +e+l l++
  RWR74268.1 240 AILEAVDDRlRFVHVIDFDIGLGGQWPSFMQEIAMKCrgpgrVPAAYLRITAIIA---EESMETRLAGDILCSFARELGIRFQIDFVELAGFETLGLSS 335
                 *********999**********************8884444444679******99...4689999*********************9999********* PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsl..eaklpreseerikvEr 287
                 +r+ +gEa++Vnl+  ++r     +     +  + +l++++sP++ v+v+ e+ ++++   sFl+ f++ le+ys+l++sl  +a+++ ++e+ + +Er
  RWR74268.1 336 IRFVEGEAVVVNLSPWIFRQI---GGAG--TAGFFRLLRRISPRIAVFVDGECRRDGTgvpSFLRNFIDGLEFYSVLLESLdaAAEIGGAAEQVRRIER 429
                 ***************999998...2222..357********************994444669*******************5445577788******** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +ll+++i   v ++ ++       +   re l  +G+ pvplse +++qa++l r+v+ ++++ve++++sl+l+W++r+Lv++SaWr
  RWR74268.1 430 FLLRPRIFRSVEAAVNR-------MVPSRELLAGSGMVPVPLSEATESQAECLRRRVPLREFHVEKRHASLMLCWQGRELVATSAWR 509
                 **********9988776.......445589****************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MKPFVDTAHQ LSISKPLSSS YEPTSVLDLR SSPASAAAIP AGVLTDEQPS SFLPIDEWDS  60
MLWDLGEKDD PAPALTNIVP QFETLNPQNL LLLPPFPPPH DPFDPSDLTH SIHPNDLVFH  120
PPMERSDLSQ IPSSSASSFD RFQLEQLIQA AECVDSNDLP LAQVILARLN QQLLYPVGKP  180
LQRAAFYFKE ALESLLLGQQ QHRSKIASSH FETVQKIVAY KAFSDLSPIF QFANFTANQA  240
ILEAVDDRLR FVHVIDFDIG LGGQWPSFMQ EIAMKCRGPG RVPAAYLRIT AIIAEESMET  300
RLAGDILCSF ARELGIRFQI DFVELAGFET LGLSSIRFVE GEAVVVNLSP WIFRQIGGAG  360
TAGFFRLLRR ISPRIAVFVD GECRRDGTGV PSFLRNFIDG LEFYSVLLES LDAAAEIGGA  420
AEQVRRIERF LLRPRIFRSV EAAVNRMVPS RELLAGSGMV PVPLSEATES QAECLRRRVP  480
LREFHVEKRH ASLMLCWQGR ELVATSAWRC S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-108GRAS family protein