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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWR74266.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 213aa MW: 24604.7 Da PI: 6.5258 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 60.5 | 2.7e-19 | 52 | 104 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++eq++ Le F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k
RWR74266.1 52 KRRLSDEQVKFLEMNFGNEHKLESARKDRLAMELGLDSRQVAVWFQNRRARWK 104
5689************************************************9 PP
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| 2 | HD-ZIP_I/II | 116.9 | 1.1e-37 | 51 | 142 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrls+eqvk+LE++F +e+kLe+ rK +la eLgl+ rqvavWFqnrRAR+k+kqlE++y +Lk+ ++a + ++++Le+ev +Lr++l+e
RWR74266.1 51 KKRRLSDEQVKFLEMNFGNEHKLESARKDRLAMELGLDSRQVAVWFQNRRARWKSKQLEEEYVRLKNMHEATVVDKCKLEAEVLKLRDQLSE 142
9****************************************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 213 aa Download sequence |
MALNLQVEDN QALLISQYYS DLYNQLPQGE TRGRRRRKKA RGGESGGVAW KKRRLSDEQV 60 KFLEMNFGNE HKLESARKDR LAMELGLDSR QVAVWFQNRR ARWKSKQLEE EYVRLKNMHE 120 ATVVDKCKLE AEVLKLRDQL SEAQEKVRTL SEQSDGAWEG ERSCCSPSSS VSMDAHPTFF 180 GDFGVENSPQ DFFIIPENCH NISGMEWLDL FGP |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 34 | 53 | RRRRKKARGGESGGVAWKKR |
| 2 | 34 | 54 | RRRRKKARGGESGGVAWKKRR |
| 3 | 35 | 54 | RRRRKKARGGESGGVAWKKR |
| 4 | 35 | 55 | RRRRKKARGGESGGVAWKKRR |
| 5 | 36 | 56 | RRRRKKARGGESGGVAWKKRR |
| 6 | 37 | 57 | RRRRKKARGGESGGVAWKKRR |
| 7 | 99 | 107 | RRARWKSKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 8e-57 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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