PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR73821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 298aa MW: 31270.8 Da PI: 9.9384 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.3e-08 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ RWR73821.1 105 KTRMCNKYNTAEGCKFGDKCHFAHGE 130 89**********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 265 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +G+rC+FaHg RWR73821.1 265 FKTKLCENFAK-GSCTFGERCHFAHG 289 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence |
MDLARKRRPD SAMNGNGGAM GTKKFKQESD SFPTGIGSKS KPCTKFFSTA GCPFGEGCHF 60 LHYVPGGINA VAHMTNLGNP ALPPVSRIPV APPAISNGPS PPLVKTRMCN KYNTAEGCKF 120 GDKCHFAHGE RELGRPTVPS HEDRPMAPMT GRLAGRIEPP PPGLAAAASF GASATAKISV 180 DASLAGAIIG KAGVNSKQIC RVTGAKLSIR EHETDPNLRN IELEGTFDQI KQASAMVREL 240 IVNIGNAAGP VKNTAAAPVA PANNFKTKLC ENFAKGSCTF GERCHFAHGA NELRKTGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 9e-51 | C3H family protein |