PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR73789.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 409aa MW: 46051.3 Da PI: 8.0887 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 2 | 26 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k++lC+ffa G C G+ C F+H+ RWR73789.1 2 PKRVLCKFFAH-GACLKGEHCEFSHD 26 79*****6666.*************5 PP | |||||||
2 | zf-CCCH | 27.9 | 3.9e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ RWR73789.1 34 VCTFYQK-GVCSYGSRCRYDHV 54 5******.*************7 PP | |||||||
3 | zf-CCCH | 21.3 | 4.8e-07 | 145 | 167 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C fa+ G C+yG+rC+ +Hg RWR73789.1 145 QPICA-FAAAGKCPYGERCPHIHG 167 67888.**************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence |
MPKRVLCKFF AHGACLKGEH CEFSHDWKDQ ANNVCTFYQK GVCSYGSRCR YDHVKASRVQ 60 APISSSSASV SYVHQASNPI QVSHPSRIAS SGKTTLVSSI PVELSALSRP FFPPDKPSWF 120 QDSGDYAISE NDRGVHSISV APSDQPICAF AAAGKCPYGE RCPHIHGDLC STCGKHCLHP 180 YRPDEREEHI KMCQKNKERL EALRHSQEIE CSVCLDRVLS KPTPAERKFG LLSECDHPFC 240 ISCIRNWRNN SPTSGMDVNS ALRACPICRK VSYYVIPSVI WYSTKEEKQE IVNSYKAKLS 300 SIDCRYFDFG SGTCPFGTSC FYKHAFRDGR LEEVVLRHLG AEDGNTVIAK DIRLSDFLSR 360 LRLTFISTQE IYAIWSAGNM LYSLHYLCLR NFSLGDETRN RGCGIYTIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-151 | C3H family protein |