PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR73789.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 409aa    MW: 46051.3 Da    PI: 8.0887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR73789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06226126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                +k++lC+ffa  G C  G+ C F+H+
  RWR73789.1  2 PKRVLCKFFAH-GACLKGEHCEFSHD 26
                79*****6666.*************5 PP

2zf-CCCH27.93.9e-093454526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 C f+++ G C+yG+rC++ H+
  RWR73789.1 34 VCTFYQK-GVCSYGSRCRYDHV 54
                5******.*************7 PP

3zf-CCCH21.34.8e-07145167326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C  fa+ G C+yG+rC+ +Hg
  RWR73789.1 145 QPICA-FAAAGKCPYGERCPHIHG 167
                 67888.**************9998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MPKRVLCKFF AHGACLKGEH CEFSHDWKDQ ANNVCTFYQK GVCSYGSRCR YDHVKASRVQ  60
APISSSSASV SYVHQASNPI QVSHPSRIAS SGKTTLVSSI PVELSALSRP FFPPDKPSWF  120
QDSGDYAISE NDRGVHSISV APSDQPICAF AAAGKCPYGE RCPHIHGDLC STCGKHCLHP  180
YRPDEREEHI KMCQKNKERL EALRHSQEIE CSVCLDRVLS KPTPAERKFG LLSECDHPFC  240
ISCIRNWRNN SPTSGMDVNS ALRACPICRK VSYYVIPSVI WYSTKEEKQE IVNSYKAKLS  300
SIDCRYFDFG SGTCPFGTSC FYKHAFRDGR LEEVVLRHLG AEDGNTVIAK DIRLSDFLSR  360
LRLTFISTQE IYAIWSAGNM LYSLHYLCLR NFSLGDETRN RGCGIYTIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-151C3H family protein