PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73648.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 363aa MW: 41006.3 Da PI: 5.18

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.4	2.6e-34	36	127	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+++++ed++++ ++ ws+ nsf+v+d+++fa+++LpkyFkhsnf+SF+RQLn YgF+kv+ ++ weF+++ F g+k+ll++ik RWR73648.1 36 FLTKTFDMVEDPATDLIVAWSQARNSFIVWDSHKFATNLLPKYFKHSNFSSFIRQLNAYGFRKVDPDR---------WEFANELFLGGQKHLLRNIK 123 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ RWR73648.1 124 RRRH 127 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MEGVKVKVED MGGSSSSPTL SPQPMEGLHD AGPPPFLTKT FDMVEDPATD LIVAWSQARN 60 SFIVWDSHKF ATNLLPKYFK HSNFSSFIRQ LNAYGFRKVD PDRWEFANEL FLGGQKHLLR 120 NIKRRRHVSQ NMQQQEMAAC VELGQFGLEG ELDQLRRDRN VLMVEIVKLR QQQQTSQAQL 180 VAMEERWLGT ERKQQRMMAF LVRALKNPTF VQRLIQRRKR QRELGGIGRK RRLPANGCSE 240 NLQLEVISQM GSQIMSYAQK EQEETTIETD IDTAFSVVDH SASNSIGNQN AKTVAGSSDP 300 NLDCASDLIW EDLLNEHFVV GTEGGGDQAD IDVEVGDLAE KPSEWGDDVQ VLVEQMGFLV 360 PTP

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MEGVKVKVED MGGSSSSPTL SPQPMEGLHD AGPPPFLTKT FDMVEDPATD LIVAWSQARN  60
SFIVWDSHKF ATNLLPKYFK HSNFSSFIRQ LNAYGFRKVD PDRWEFANEL FLGGQKHLLR  120
NIKRRRHVSQ NMQQQEMAAC VELGQFGLEG ELDQLRRDRN VLMVEIVKLR QQQQTSQAQL  180
VAMEERWLGT ERKQQRMMAF LVRALKNPTF VQRLIQRRKR QRELGGIGRK RRLPANGCSE  240
NLQLEVISQM GSQIMSYAQK EQEETTIETD IDTAFSVVDH SASNSIGNQN AKTVAGSSDP  300
NLDCASDLIW EDLLNEHFVV GTEGGGDQAD IDVEVGDLAE KPSEWGDDVQ VLVEQMGFLV  360
PTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	232	RRKRQRELGGIGRKRR
2	218	233	RRKRQRELGGIGRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-102	HSF family protein