PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR73432.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 747aa    MW: 82919.9 Da    PI: 6.3206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR73432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-2189144156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r++L+kklgL+ rqVk+WFqNrR++ k
  RWR73432.1  89 RKKYHRHTAEQIREMETLFKESPHPDEKQRQQLSKKLGLNPRQVKFWFQNRRTQIK 144
                 7999************************************************9877 PP
2START222.41.5e-692604861206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                 e+a++a++el k+a+a++p+Wv+s+    e++n+de+ ++f ++++        +s+e++r++gvv+ ++++lv+ ++d++ qW+e++     ka+t++
  RWR73432.1 260 EIANQAMNELTKMATAGDPLWVRSVetgrEILNYDEYAREFLPEGSssgggrikRSIEVSRETGVVFLDMPRLVQAFMDVN-QWKEMFScmvaKAATVD 357
                 57899**************************************9999**********************************.***************** PP

                 EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                 vis+g       a+qlm+aelq+l+p+v  R+++f+R+++ql+ ++w+ivdvS+d  ++++ + sv +++++pSg++i++k ngh+kv+wveh +++++
  RWR73432.1 358 VISNGegdnrnCAIQLMFAELQMLTPMVTaREVYFIRQCKQLSPDSWAIVDVSIDRVEDNT-DTSVGKCRKRPSGCIIQDKCNGHCKVIWVEHLECQKA 455
                 *************************************************************.9************************************ PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                 ++h l+rslv+sgla+gak+w+atlq qce+
  RWR73432.1 456 TVHTLYRSLVNSGLAFGAKHWMATLQLQCER 486
                 *****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    
MNLDMSNPPN SRTKDFFASP ALSLSLAGVF RGATGAVEEV EEGDEESGGG REEAVDISSE  60
NTGPGRSDED ADAMELQEEE VDERGKKKRK KYHRHTAEQI REMETLFKES PHPDEKQRQQ  120
LSKKLGLNPR QVKFWFQNRR TQIKAIQERH ENSLLKTEME KLREENKCMR QTIKKACCPN  180
CGFATSNKDS TMMTTEEQQL RIENARLKAE VEKLRTTIGK FPGGTTSPSS SCSGGNDQEN  240
RSSLDFYTGF FGLEKSRISE IANQAMNELT KMATAGDPLW VRSVETGREI LNYDEYAREF  300
LPEGSSSGGG RIKRSIEVSR ETGVVFLDMP RLVQAFMDVN QWKEMFSCMV AKAATVDVIS  360
NGEGDNRNCA IQLMFAELQM LTPMVTAREV YFIRQCKQLS PDSWAIVDVS IDRVEDNTDT  420
SVGKCRKRPS GCIIQDKCNG HCKVIWVEHL ECQKATVHTL YRSLVNSGLA FGAKHWMATL  480
QLQCERLVFF MATNVPTKDS SGIATLAGRK SVLKLAQRMT SSFSRAIGAS SYHTWAKIST  540
KGGDGIKVAS RRNMNDPGEP QGLILCAVSS IWLPVSPHAL FDFLRDDARW NEWDIMLTGG  600
QVQTIANLAK GQDRGNSVTL HATKSKETNL WILQDSCTNA FESMVVRAAV DIPGMQSVMT  660
GVDSSNIAIL SSGFSILPDG LETRPLVISS RPEERSMEGG SLLTVAFQIL ANPSPTAKLT  720
TESMETTNTL ISCTMQNIKT SLQCEDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein