PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR73379.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HSF
Protein Properties Length: 313aa    MW: 35290.2 Da    PI: 9.4666
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR73379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35151072103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++li w +++nsf+v+d+  f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+hksF +g+k+ll++i 
    RWR73379.1  15 FVLKTYQMVNDPTTDSLIFWGRDNNSFIVSDPLVFSQRLLPTYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHKSFLRGQKHLLKNIL 102
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
    RWR73379.1 103 RRKSH 107
                   *9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MVCGMESNNP VAAPFVLKTY QMVNDPTTDS LIFWGRDNNS FIVSDPLVFS QRLLPTYFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFAHKSF LRGQKHLLKN ILRRKSHRHG HPTHHRLLLP  120
KREDDLPADD QIEKTIISEL TRLKQEQKAI EDEMQGISRR LQATEKKPQQ MMAFLMKVIE  180
DPTLLSRMTA GKNPTKRLAE KKKRRLTTIP SPKEDMVGVV PSSGAAEDDM ASVVPVVNMG  240
MVGPTTGEYF PTASATDTSV RNGVGFGLGN SDTGFSFGPV VSEYNSNSSQ MVFFPEWGGL  300
EATPIPYSIF EGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205KKKRR
2201206KKKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-77HSF family protein