PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73313.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 1003aa MW: 110089 Da PI: 5.6036

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9e-06	699	720	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+f+++ G C Gd+CkF+H+ RWR73313.1 699 SNCKFHLK-GKCEQGDKCKFSHD 720 58****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MAFLQLRNQC LGMTSSKMKA PNLLTPKTKF LVVNAKSSGN PRDEKRFDDS GKPKNLSVEK 60 GPIADEKPLE IETQSPIHAK VGLITQGEGN CELGDRDKVD SDSLLIGTGR IIDENAKFDD 120 TQNAVLCGGS LIDGKIGQVV GEKSRGGFVG SDGVEFKTLS KEKDPIVGGP SNGINTQNGT 180 SRQEMMDEDV GHGKLTLEEL PMEKDMIRAG STIPISSLDV GSCLGQGFGD GELEKVVQRE 240 GSDGFVDLNA TDFEQLSIEN CPVADGSPEL MDAQCRILTV QGSSADRELD QVIQHKGSDE 300 SVDIDELEIE NLSMDKDHSS IHTQDGLIGG GESPVNQRFE QIIRPQGSGA SVYCGNVELE 360 KLLTGNGTNA DESPKPTNTE GSSFCDGIER SPVGGKLEHA MQGQGRQALV AYSNHEFKKL 420 SEEEDPAADG SSEDVMLRQQ AQQQEHDELL NKDSLKRSIS SVQKDLIVKN IDTLFDTQDG 480 CNGLEQNDRE CTHHEIQKEG HELNALCSSD NSANSLRLKN WGKVDAIGNV NDSAALISDQ 540 EMEDGEIPTE SGSLMEPYDS ILEDVVCEQR QEKEGRISDS FNEQGEDFAL TCKEQLRGDK 600 KDMLHSSGFT GSFTFMENFI PGNFEAKEMK GNMDESKKPS SSKTDKDAKV RDKKKRNPPT 660 EERKAKKNLA KKRKRAEQNK KLGVKRLKLQ PILKPKVVSN CKFHLKGKCE QGDKCKFSHD 720 AVPLTKSQPC KHFAKHSCLK GDDCPFDHQL SKYPCFNFMS RGFCNRGDAC LFSHQMPIAE 780 NYSGAPNISN PEPTNSEKQL SINGTSLLAV NHVLKETSLC TPFHMQSLLP KHPKQQVADV 840 RRRPLRQAPE GLRFLSFAEA PLDDSNKKQQ EKTPSNKCNS IEMSNQQKQT ELQTPVKMNE 900 MPRRSPDSSL SSCQSLASFS FGSKNSSTPV QNAHSSMPTS VGKNESNKMA KQSLHAPLNA 960 HASTLESNSF SNKFAAPPHA EKLRSRSTDA SQILEDFLFS SIN

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MAFLQLRNQC LGMTSSKMKA PNLLTPKTKF LVVNAKSSGN PRDEKRFDDS GKPKNLSVEK  60
GPIADEKPLE IETQSPIHAK VGLITQGEGN CELGDRDKVD SDSLLIGTGR IIDENAKFDD  120
TQNAVLCGGS LIDGKIGQVV GEKSRGGFVG SDGVEFKTLS KEKDPIVGGP SNGINTQNGT  180
SRQEMMDEDV GHGKLTLEEL PMEKDMIRAG STIPISSLDV GSCLGQGFGD GELEKVVQRE  240
GSDGFVDLNA TDFEQLSIEN CPVADGSPEL MDAQCRILTV QGSSADRELD QVIQHKGSDE  300
SVDIDELEIE NLSMDKDHSS IHTQDGLIGG GESPVNQRFE QIIRPQGSGA SVYCGNVELE  360
KLLTGNGTNA DESPKPTNTE GSSFCDGIER SPVGGKLEHA MQGQGRQALV AYSNHEFKKL  420
SEEEDPAADG SSEDVMLRQQ AQQQEHDELL NKDSLKRSIS SVQKDLIVKN IDTLFDTQDG  480
CNGLEQNDRE CTHHEIQKEG HELNALCSSD NSANSLRLKN WGKVDAIGNV NDSAALISDQ  540
EMEDGEIPTE SGSLMEPYDS ILEDVVCEQR QEKEGRISDS FNEQGEDFAL TCKEQLRGDK  600
KDMLHSSGFT GSFTFMENFI PGNFEAKEMK GNMDESKKPS SSKTDKDAKV RDKKKRNPPT  660
EERKAKKNLA KKRKRAEQNK KLGVKRLKLQ PILKPKVVSN CKFHLKGKCE QGDKCKFSHD  720
AVPLTKSQPC KHFAKHSCLK GDDCPFDHQL SKYPCFNFMS RGFCNRGDAC LFSHQMPIAE  780
NYSGAPNISN PEPTNSEKQL SINGTSLLAV NHVLKETSLC TPFHMQSLLP KHPKQQVADV  840
RRRPLRQAPE GLRFLSFAEA PLDDSNKKQQ EKTPSNKCNS IEMSNQQKQT ELQTPVKMNE  900
MPRRSPDSSL SSCQSLASFS FGSKNSSTPV QNAHSSMPTS VGKNESNKMA KQSLHAPLNA  960
HASTLESNSF SNKFAAPPHA EKLRSRSTDA SQILEDFLFS SIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	453	458	DSLKRS
2	653	675	KKKRNPPTEERKAKKNLAKKRKR
3	654	676	KKKRNPPTEERKAKKNLAKKRKR
4	654	674	KKRNPPTEERKAKKNLAKKRK
5	670	676	AKKRKRA